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7 changes: 3 additions & 4 deletions gui_tutorial.rst
Original file line number Diff line number Diff line change
Expand Up @@ -361,6 +361,9 @@ Region'. Now all of the 'Reference tissue' options will become
available, but leave these as they are: we will accept the default
option of using the CSF (in the ventricles) for calibration.

.. image:: images/calib_refregion.png
:alt: BASIL GUI Calibration

You could click 'Run' now and wait for the analysis to
complete. But, in the interests of time we will save ourselves the
bother of doing all of the registration all over again. Before
Expand All @@ -370,10 +373,6 @@ clicking run, therefore, do:
``csfmask.nii.gz`` from the data directory. This is a ready
prepared ventricular mask for this subject. (in fact it is precisely
the mask you would get if you ran the analysis as setup above).

.. image:: images/calib_refregion.png
:alt: BASIL GUI Calibration

- Go back to the 'Structure' tab and choose 'None' for 'Structural
data from'. This will turn off all of the registration
processes.
Expand Down