Pharmaverse Docker Image

⚠️ DEVELOPMENT STATUS: This project is currently in active development. Features and APIs may change.

🔬 Docker environment for pharmaceutical data analysis with all Pharmaverse packages pre-installed.

Built on rocker/tidyverse with 40+ pharmaverse packages for CDISC ADaM/SDTM, clinical trials, and regulatory submissions.

What's Included

This image includes:

• Base: rocker/tidyverse (R, RStudio Server, tidyverse packages, quarto)
• Pharmaverse Packages: 40+ packages for pharmaceutical data analysis and reporting

Pharmaverse Packages

• admiral, admiralmetabolic, admiralneuro, admiralonco, admiralophtha, admiralpeds, admiralvaccine
• cards, cardx
• chevron, clinify, connector, covtracer
• datacutr, datasetjson, diffdf
• ggsurvfit, gridify, gtsummary
• logrx, metacore, metatools
• pharmaRTF, pharmaverseadam, pharmaverseraw, pharmaversesdtm, pkglite
• rhino, riskmetric, rlistings, rtables
• sdtmchecks, teal, teal.modules.clinical, teal.modules.general,, tern, tfrmt, tfrmtbuilder
• tidyCDISC, tidytlg, Tplyr
• whirl, xportr

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1. Pull the Image

For Production (Reproducible Research):

# Pin to exact version - never changes
docker pull ghcr.io/pharmaverse/docker_pharmaverse:v4.5.1

For Development:

# Get latest features & updates
docker pull ghcr.io/pharmaverse/docker_pharmaverse:latest

💡 See VERSIONING.md for choosing the right tag.

2. Run RStudio Server

docker run -d \
  -p 8787:8787 \
  -e PASSWORD=yourpassword \
  -v $(pwd):/home/rstudio/workspace \
  ghcr.io/pharmaverse/docker_pharmaverse:v4.5.1

Access at: http://localhost:8787

• Username: rstudio
• Password: yourpassword (what you set above)

3. Run R in Terminal

docker run -it --rm ghcr.io/pharmaverse/docker_pharmaverse:v4.5.1

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🔧 GitHub Codespaces & Dev Containers

Open in GitHub Codespaces

Click to open this project in a cloud development environment:

Use with VS Code Dev Containers

1. Install VS Code and Docker Desktop
2. Install Dev Containers extension
3. Open this repository in VS Code
4. Press F1 → Dev Containers: Reopen in Container

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💻 Building & Development

Build Locally

# Clone the repository
git clone https://github.com/pharmaverse/docker_pharmaverse.git
cd docker_pharmaverse

# Build the image
docker build -t pharmaverse:local .

# Run it
docker run -d -p 8787:8787 -e PASSWORD=test pharmaverse:local

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🎯 Use Cases

Perfect for:

• ✅ Pharmaceutical data analysis - ADaM, SDTM, TLFs
• ✅ Clinical trial programming - Regulatory submissions
• ✅ Reproducible research - Validated environments
• ✅ Training & education - Teaching pharma programming
• ✅ CI/CD pipelines - Automated testing & reporting
• ✅ Collaborative development - Consistent team environments

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📞 Support & Community

Getting Help

Issue Type	Where to Ask
🐛 Docker image issues	GitHub Issues
📦 R package questions	Individual package repositories
🖥️ RStudio Server	Rocker Project
💬 General pharmaverse	Pharmaverse Slack

Useful Links

• 📖 Pharmaverse Website
• 🐳 Rocker Project
• 📦 CRAN
• 🎓 Pharmaverse Examples

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📄 License

This project is licensed under the Apache 2.0 License - see the LICENSE file for details.

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🙏 Acknowledgments

• Rocker Project - Excellent base R Docker images
• Pharmaverse Community - Outstanding open-source pharma packages
• R Core Team - The R language
• All Contributors - Thank you! 🎉

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⭐ Star This Repository

If you find this useful, please consider giving it a star! It helps others discover the project.

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Built with ❤️ by the Pharmaverse Community