custom report

.Rbuildignore

@@ -11,9 +11,8 @@ inst/source/Library
 inst/source/*Rcheck
 inst/source/*tar.gz
 inst/*.rds
--tests$
-^validation_report_*.html$
-^\.github$
-^_pkgdown\.yml$
-^docs$
-^pkgdown$
+validation_report_*
+_pkgdown.yaml
+pkgdown
+.github
+^vignettes/articles$

.devcontainer/devcontainer.json

@@ -0,0 +1,25 @@
+{
+  "image": "ghcr.io/rocker-org/devcontainer/tidyverse:4.3",
+  "name": "GitHub-Copilot Workshop",
+  "postCreateCommand": "sudo cp --force ./.devcontainer/welcome-message.txt /usr/local/etc/vscode-dev-containers/first-run-notice.txt",
+  "customizations": {
+    "codespaces": {
+      "openFiles": ["README.md"]
+    },
+    "vscode": {
+      "settings": {
+        "r.rterm.linux": "/usr/local/bin/radian",
+        "r.bracketedPaste": true,
+        "r.plot.useHttpgd": true,
+        "[r]": {
+          "editor.wordSeparators": "`~!@#%$^&*()-=+[{]}\\|;:'\",<>/?"
+        },
+        "editor.wordWrap": "on"
+      },
+      "extensions": [
+        "github.copilot",
+        "reditorsupport.r"
+      ]
+    }
+  }
+}

.github/workflows/R-CMD-check.yaml

@@ -4,6 +4,7 @@ on:
   push:
     branches: [main, master]
   pull_request:
+  workflow_dispatch:
 
 name: R-CMD-check.yaml
 
@@ -32,7 +33,6 @@ jobs:
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         with:
           tinytex: true
-          version: 1.7.13
 
       - uses: r-lib/actions/check-r-package@v2
         with:

.gitignore

@@ -4,6 +4,7 @@
 .Ruserdata
 riskreports.Rproj
 inst/doc
+vignettes/articles/Generate-Customized-Report_gbbfx.Rmd
 inst/assessments
 inst/source/Outputs/
 inst/source/Library
@@ -12,3 +13,4 @@ inst/source/*tar.gz
 inst/source/
 inst/checks/
 docs
+inst/dev/TMP_tests

DESCRIPTION

@@ -1,31 +1,34 @@
 Package: riskreports
 Title: Package Validation Reports
-Version: 0.0.0.9003
+Version: 0.0.0.9006
 Authors@R: c(
     person("Lluís", "Revilla Sancho", , "lluis.revilla_sancho@roche.com", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-9747-2570")),
-    person("F. Hoffmann-La Roche AG", role = c("cph", "fnd"))
+    person("R Validation Hub", role = "cph", email = "r-val-hub-maintainers@lists.r-consortium.org")
   )
-Description: Documents package checks for validation in a pharmaceutic
+Description: Documents package checks for validation in a pharmaceutic 
     context.
 License: MIT + file LICENSE
 URL: https://github.com/pharmaR/riskreports, https://pharmar.github.io/riskreports/
 BugReports: https://github.com/pharmaR/riskreports/issues
 Depends:
-    R (>= 4.4.0)
-Imports: 
+    R (>= 4.3.0)
+Imports:
     methods,
-    quarto (>= 1.4.4)
+    htmltools,
+    quarto (>= 1.4.4),
+    reactable
 Suggests: 
     knitr,
     riskmetric (>= 0.2.4),
     rmarkdown,
     spelling,
-    testthat (>= 3.0.0)
+    testthat (>= 3.0.0),
+    withr (>= 3.0.2)
 VignetteBuilder: 
     knitr
 Config/testthat/edition: 3
 Encoding: UTF-8
 Language: en-US
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.2
+RoxygenNote: 7.3.3

NAMESPACE

@@ -2,8 +2,13 @@
 
 export(assessment)
 export(check_reporter)
+export(custom_package_report)
 export(environ_report)
+export(is_risk_error)
 export(options_report)
 export(package_report)
+export(summary_table)
+importFrom(htmltools,div)
 importFrom(methods,is)
 importFrom(tools,check_packages_in_dir_details)
+importFrom(utils,getFromNamespace)

R/check.R

@@ -38,11 +38,7 @@ environ_report <- function(show = NULL, exclude = NULL) {
     return(NULL)
   }
 
-
-  env <- fill_in(environ, keep_names)
-
-  # TODO: See note on truncated variables on Windows
-  env
+  environ[keep_names]
 }
 
 #' Export options