TACIT Vocal Learning Mammal M1+PV

Version for applying TACIT to vocal learning across zoonomia mammals for M1 and PV.

0.1.4

Checks for ensuring ability to run new p-value calculations

TACIT_conditionalpValuesUpdated

We updated the code for computing conditional p-values to make it clearer and easier to use.

TACIT_revised

We have added code for making sequence embeddings of all open chromatin region orthologs and for simulating p-value distributions.

0.1.1: Merge pull request #1 from pfenninglab/embedding-visualization

add sequence embedding visualization scripts

TACIT_initial

This has the code that TACIT uses to speed up and run phylogenetic permulations.