feat: ETL Pipeline Notebooks and Fix LinkML SQLAlchemy generation#18

Merged

petercarbsmith merged 10 commits intomainfrom

Peter-linkml-refactor

Jan 16, 2026

Commits on Dec 22, 2025

adding comment to init.py to try to solve CI CD issues
petercarbsmith
committed

Commits on Dec 23, 2025

fixed primary_ag_product etl pipeline, modified master flow script and docs
petercarbsmith
committed

Commits on Dec 30, 2025

holiday work. New notebook for importing gsheeets to pandas and playing around
petercarbsmith
committed

Commits on Jan 3, 2026

Commits on Jan 5, 2026

was trying to fix dev container kernel issue. Did not succeed. Also made new ETL notebook and modified some of the gsheet extraction notebook
petercarbsmith
committed

Commits on Jan 6, 2026

modified etl_notebook. Db is now running on localhost
petercarbsmith
committed

Commits on Jan 7, 2026

Commits on Jan 11, 2026

modified engine.py to get correct database url from env
avi9664
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