chore: update all deps to latest, remove peerDependencies from private packages

.changeset/externalize-cjs-deps.md

@@ -0,0 +1,6 @@
+---
+"perstack": patch
+"create-expert": patch
+---
+
+fix: externalize ink, react, dotenv to eliminate CJS from ESM bundles

.changeset/update-deps-cleanup.md

@@ -0,0 +1,6 @@
+---
+"perstack": patch
+"create-expert": patch
+---
+
+chore: update all dependencies to latest and clean up peerDependencies

.github/dependabot.yml

@@ -0,0 +1,42 @@
+version: 2
+updates:
+  # Root package.json (turbo, biome, etc.)
+  - package-ecosystem: "npm"
+    directory: "/"
+    schedule:
+      interval: "daily"
+    open-pull-requests-limit: 10
+    groups:
+      dev-tools:
+        patterns:
+          - "@biomejs/*"
+          - "turbo"
+          - "knip"
+          - "typescript"
+          - "@types/*"
+          - "@changesets/*"
+      npm-dependencies:
+        patterns:
+          - "*"
+        exclude-patterns:
+          - "@biomejs/*"
+          - "turbo"
+          - "knip"
+          - "typescript"
+          - "@types/*"
+          - "@changesets/*"
+    labels:
+      - "dependencies"
+    commit-message:
+      prefix: "chore(deps)"
+
+  # GitHub Actions
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "daily"
+    labels:
+      - "dependencies"
+      - "github-actions"
+    commit-message:
+      prefix: "chore(deps)"

apps/base/package.json

@@ -29,17 +29,17 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
-    "@modelcontextprotocol/sdk": "^1.25.3",
+    "@modelcontextprotocol/sdk": "^1.26.0",
     "@perstack/core": "workspace:*",
-    "commander": "^14.0.2",
+    "commander": "^14.0.3",
     "mime-types": "^3.0.2",
     "ts-dedent": "^2.2.0",
     "zod": "^4.3.6"
   },
   "devDependencies": {
     "@tsconfig/node22": "^22.0.5",
     "@types/mime-types": "^3.0.1",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"

apps/create-expert-skill/package.json

@@ -26,14 +26,14 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
-    "@modelcontextprotocol/sdk": "^1.25.3",
-    "commander": "^14.0.2",
+    "@modelcontextprotocol/sdk": "^1.26.0",
+    "commander": "^14.0.3",
     "ts-dedent": "^2.2.0",
     "zod": "^4.3.6"
   },
   "devDependencies": {
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"

apps/create-expert/package.json

@@ -25,16 +25,16 @@
   "dependencies": {
     "@perstack/core": "workspace:*",
     "@perstack/runtime": "workspace:*",
-    "commander": "^14.0.2",
-    "dotenv": "^17.2.3",
-    "ink": "^6.6.0",
-    "react": "^19.2.3",
+    "commander": "^14.0.3",
+    "dotenv": "^17.3.1",
+    "ink": "^6.7.0",
+    "react": "^19.2.4",
     "smol-toml": "^1.6.0"
   },
   "devDependencies": {
     "@perstack/tui": "workspace:*",
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3"
   },

apps/perstack/package.json

@@ -20,21 +20,21 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
-    "@paralleldrive/cuid2": "^3.0.6",
-    "@perstack/api-client": "^0.0.54",
+    "@paralleldrive/cuid2": "^3.3.0",
+    "@perstack/api-client": "^0.0.55",
     "@perstack/core": "workspace:*",
     "@perstack/runtime": "workspace:*",
-    "commander": "^14.0.2",
-    "dotenv": "^17.2.3",
-    "ink": "^6.6.0",
-    "react": "^19.2.3",
+    "commander": "^14.0.3",
+    "dotenv": "^17.3.1",
+    "ink": "^6.7.0",
+    "react": "^19.2.4",
     "smol-toml": "^1.6.0"
   },
   "devDependencies": {
     "@perstack/filesystem-storage": "workspace:*",
     "@perstack/tui": "workspace:*",
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"

apps/runtime/package.json

@@ -32,26 +32,26 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
-    "@ai-sdk/amazon-bedrock": "^4.0.30",
-    "@ai-sdk/anthropic": "^3.0.23",
-    "@ai-sdk/azure": "^3.0.18",
-    "@ai-sdk/deepseek": "^2.0.11",
-    "@ai-sdk/google": "^3.0.13",
-    "@ai-sdk/google-vertex": "^4.0.28",
-    "@ai-sdk/openai": "^3.0.18",
-    "@modelcontextprotocol/sdk": "^1.25.3",
-    "@paralleldrive/cuid2": "^3.0.6",
-    "@perstack/api-client": "^0.0.54",
+    "@ai-sdk/amazon-bedrock": "^4.0.60",
+    "@ai-sdk/anthropic": "^3.0.44",
+    "@ai-sdk/azure": "^3.0.30",
+    "@ai-sdk/deepseek": "^2.0.20",
+    "@ai-sdk/google": "^3.0.29",
+    "@ai-sdk/google-vertex": "^4.0.58",
+    "@ai-sdk/openai": "^3.0.29",
+    "@modelcontextprotocol/sdk": "^1.26.0",
+    "@paralleldrive/cuid2": "^3.3.0",
+    "@perstack/api-client": "^0.0.55",
     "@perstack/base": "workspace:*",
     "@perstack/core": "workspace:*",
-    "ai": "^6.0.49",
-    "commander": "^14.0.2",
-    "dotenv": "^17.2.3",
-    "ollama-ai-provider-v2": "^3.0.2",
+    "ai": "^6.0.86",
+    "commander": "^14.0.3",
+    "dotenv": "^17.3.1",
+    "ollama-ai-provider-v2": "^3.3.0",
     "smol-toml": "^1.6.0",
     "ts-dedent": "^2.2.0",
-    "undici": "^7.19.1",
-    "xstate": "^5.25.1"
+    "undici": "^7.22.0",
+    "xstate": "^5.28.0"
   },
   "devDependencies": {
     "@perstack/anthropic-provider": "workspace:*",
@@ -64,7 +64,7 @@
     "@perstack/provider-core": "workspace:*",
     "@perstack/vertex-provider": "workspace:*",
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
     "memfs": "^4.56.10",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",

biome.json

@@ -1,5 +1,5 @@
 {
-  "$schema": "https://biomejs.dev/schemas/2.3.10/schema.json",
+  "$schema": "https://biomejs.dev/schemas/2.3.15/schema.json",
   "vcs": {
     "enabled": false,
     "clientKind": "git",

package.json

@@ -1,11 +1,6 @@
 {
   "name": "perstack-monorepo",
   "private": true,
-  "pnpm": {
-    "overrides": {
-      "jws": ">=4.0.1"
-    }
-  },
   "scripts": {
     "clean": "turbo run clean",
     "check-deps": "pnpx knip --config ./knip.json",
@@ -27,15 +22,15 @@
     "validate:all": "pnpm validate:versions && pnpm validate:changeset && pnpm check:schema-diff"
   },
   "devDependencies": {
-    "@biomejs/biome": "^2.3.12",
+    "@biomejs/biome": "^2.3.15",
     "@changesets/changelog-github": "^0.5.2",
     "@changesets/cli": "^2.29.8",
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
     "@vitest/coverage-v8": "^4.0.18",
-    "dotenv": "^17.2.3",
-    "jsdom": "^27.4.0",
-    "knip": "5.82.1",
+    "dotenv": "^17.3.1",
+    "jsdom": "^28.0.0",
+    "knip": "5.83.1",
     "smol-toml": "^1.6.0",
     "tsup": "^8.5.1",
     "tsx": "^4.21.0",

packages/core/package.json

@@ -26,12 +26,12 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
-    "@paralleldrive/cuid2": "^3.0.6",
+    "@paralleldrive/cuid2": "^3.3.0",
     "zod": "^4.3.6"
   },
   "devDependencies": {
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"

packages/core/src/schemas/perstack-toml.ts

@@ -13,10 +13,7 @@ export const defaultReasoningBudget: ReasoningBudget = "low"
 
 export const reasoningBudgetSchema = z.union([
   z.enum(["none", "minimal", "low", "medium", "high"]),
-  z
-    .number()
-    .int()
-    .nonnegative(), // 0 disables reasoning (same as "none")
+  z.number().int().nonnegative(), // 0 disables reasoning (same as "none")
 ])
 
 const domainPatternRegex =

packages/filesystem/package.json

@@ -30,9 +30,9 @@
     "@perstack/core": "workspace:*"
   },
   "devDependencies": {
-    "@paralleldrive/cuid2": "^3.0.6",
+    "@paralleldrive/cuid2": "^3.3.0",
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"

packages/providers/anthropic/package.json

@@ -26,16 +26,14 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
-    "@ai-sdk/anthropic": "^3.0.23",
+    "@ai-sdk/anthropic": "^3.0.44",
     "@perstack/core": "workspace:*",
     "@perstack/provider-core": "workspace:*"
   },
-  "peerDependencies": {
-    "ai": "^6.0.0"
-  },
   "devDependencies": {
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
+    "ai": "^6.0.86",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"

packages/providers/azure-openai/package.json

@@ -26,16 +26,14 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
-    "@ai-sdk/azure": "^3.0.18",
+    "@ai-sdk/azure": "^3.0.30",
     "@perstack/core": "workspace:*",
     "@perstack/provider-core": "workspace:*"
   },
-  "peerDependencies": {
-    "ai": "^6.0.0"
-  },
   "devDependencies": {
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
+    "ai": "^6.0.86",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"

packages/providers/bedrock/package.json

@@ -26,16 +26,14 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
-    "@ai-sdk/amazon-bedrock": "^4.0.30",
+    "@ai-sdk/amazon-bedrock": "^4.0.60",
     "@perstack/core": "workspace:*",
     "@perstack/provider-core": "workspace:*"
   },
-  "peerDependencies": {
-    "ai": "^6.0.0"
-  },
   "devDependencies": {
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
+    "ai": "^6.0.86",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"

packages/providers/core/package.json

@@ -16,14 +16,12 @@
   },
   "dependencies": {
     "@perstack/core": "workspace:*",
-    "undici": "^7.19.1"
-  },
-  "peerDependencies": {
-    "ai": "^6.0.0"
+    "undici": "^7.22.0"
   },
   "devDependencies": {
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
+    "ai": "^6.0.86",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"

packages/providers/deepseek/package.json

@@ -26,16 +26,14 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
-    "@ai-sdk/deepseek": "^2.0.11",
+    "@ai-sdk/deepseek": "^2.0.20",
     "@perstack/core": "workspace:*",
     "@perstack/provider-core": "workspace:*"
   },
-  "peerDependencies": {
-    "ai": "^6.0.0"
-  },
   "devDependencies": {
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
+    "ai": "^6.0.86",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"

packages/providers/google/package.json

@@ -26,16 +26,14 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
-    "@ai-sdk/google": "^3.0.13",
+    "@ai-sdk/google": "^3.0.29",
     "@perstack/core": "workspace:*",
     "@perstack/provider-core": "workspace:*"
   },
-  "peerDependencies": {
-    "ai": "^6.0.0"
-  },
   "devDependencies": {
     "@tsconfig/node22": "^22.0.5",
-    "@types/node": "^25.0.10",
+    "@types/node": "^25.2.3",
+    "ai": "^6.0.86",
     "tsup": "^8.5.1",
     "typescript": "^5.9.3",
     "vitest": "^4.0.18"