PepSS is a sequence based secondary structure predictor for peptides.
It takes a list of peptides in Fasta format and provides 3 state secondary structure predictions for each residue - Helix, Strand and Other.
It is very fast as it doesn't use evolutionary information. Instead just amino acid identity, isoelectric point, hydrophibicity and values from the TOP-IDP scale are used to make the predictions.
This makes it suitable for proteomic datasets where there may be many thousands of peptides present.
Click here to open the notebook on Google Colab. Follow the instructions on the notebook to make your predictions.