Repositories list

• ycrc.github.io

  Public
  documentation repo for the YCRC, see src branch for more info

  HTML

  •18•41•1•0•Updated Dec 23, 2025Dec 23, 2025

• mkosi

  Public
  💽 Build Bespoke OS Images

  Python

  •

  GNU Lesser General Public License v2.1

  •400•0•0•0•Updated Dec 19, 2025Dec 19, 2025

• high_performance_python

  Public
  Code and examples for the YCRC High Performance Python workshop

  Jupyter Notebook

  •1•8•0•0•Updated Dec 16, 2025Dec 16, 2025

• llms-on-hpc

  Public
  Code repo to accompany the LLMs on HPC workshop

  Jupyter Notebook

  •0•6•0•0•Updated Dec 10, 2025Dec 10, 2025

• job_defense_shield

  Public
  Identify and reduce instances of underutilization by the users of high-performance computing systems

  Python

  •

  GNU General Public License v2.0

  •4•0•0•0•Updated Dec 3, 2025Dec 3, 2025

• slurm

  Public
  C

  •

  Other

  •0•0•0•0•Updated Nov 24, 2025Nov 24, 2025

• ycrc_desktop

  Public
  OOD app for virtual desktop within a batch job.

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

• ycrc_rstudio_server

  Public
  OOD RStudio Server app

  HTML

  •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

• IntermediateHPC

  Public
  Files and code for Intermediate HPC Workshop

  1•2•0•0•Updated Nov 11, 2025Nov 11, 2025

• jobstats

  Public
  Python

  •

  GNU General Public License v2.0

  •26•1•0•0•Updated Nov 6, 2025Nov 6, 2025

• Intro-to-HPC

  Public
  Exercises for Introduction to HPC workshop

  Shell

  •3•9•0•0•Updated Sep 29, 2025Sep 29, 2025

• ycga-public

  Public
  Python

  •0•0•0•0•Updated Sep 11, 2025Sep 11, 2025

• ood_lib

  Public
  Partition-processing code for Open OnDemand

  JavaScript

  •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

• hpc_containers

  Public
  Files and code for Reproducible HPC Containers video

  C

  •0•0•0•0•Updated Apr 15, 2025Apr 15, 2025

• ycrc_jupyter

  Public
  OOD Jupyter app

  HTML

  •

  MIT License

  •0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

• network-aware-bwa

  Public
  the Burrows Wheeler Aligner with networking capabilities

  C

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Mar 11, 2025Mar 11, 2025

• ood_singularity

  Public
  Apptainer images for OOD apps

  0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• ycrc_stata

  Public
  OOD Stata GUI

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• ycrc_slicer

  Public
  OOD 3D Slicer app

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• ycrc_matlab

  Public
  OOD MATLAB GUI

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• ycrc_mathematica

  Public
  OOD Mathematica app

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• ycrc_chimerax

  Public
  OOD ChimeraX in a Remote Desktop

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• ycrc_chimera

  Public
  OOD Chimera Desktop GUI

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• ycrc_cluster_status

  Public
  0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• ycrc_quota

  Public
  0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• usr-scripts

  Public
  miscellaneous scripts for users

  Python

  •

  GNU General Public License v3.0

  •2•3•1•0•Updated Dec 7, 2024Dec 7, 2024

• ycrc_gsea

  Public
  OOD Broad GSEA app

  Shell

  •

  MIT License

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• ycrc_jupyter_julia

  Public
  OOD Jupyter app with Julia kernel

  HTML

  •

  MIT License

  •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• ycrc_codeserver

  Public
  OOD VSCode Code Server app

  HTML

  •

  MIT License

  •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• ycrc_matlab_proxy

  Public
  OOD MATLAB via direct proxy

  HTML

  •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024