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    16 repositories

    • trackastra

      Public
      Transformer-based cell tracking for live-cell microscopy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •28•128•6•1•Updated Mar 31, 2026Mar 31, 2026

    • muvit

      Public
      Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•30•1•0•Updated Mar 2, 2026Mar 2, 2026

    • DLAI_2025

      Public
      course material
      Jupyter Notebook
      •1•0•0•0•Updated Feb 5, 2026Feb 5, 2026

    • spotiflow

      Public
      Accurate and efficient spot detection for microscopy data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•122•5•1•Updated Feb 5, 2026Feb 5, 2026

    • napari-spotiflow

      Public
      Spotiflow plugin for napari
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•16•1•0•Updated Feb 2, 2026Feb 2, 2026

    • trackastra-models

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • napari-trackastra

      Public
      napari plugin for trackastra
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•17•2•0•Updated Nov 12, 2025Nov 12, 2025

    • spotiflow-models

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • BCSS

      Public
      Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourcing enables convolution…
      Python
      •
      MIT License
      •23•0•0•0•Updated Sep 9, 2025Sep 9, 2025

    • diffusion_model_tutorial

      Public
      Jupyter Notebook
      •0•3•0•0•Updated Feb 15, 2025Feb 15, 2025

    • DLIA_24

      Public
      Seminar Deep Learning for image analysis
      0•1•0•0•Updated Dec 12, 2024Dec 12, 2024

    • tarrow

      Public
      Time arrow prediction for live-cell microscopy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•22•0•0•Updated Jun 17, 2024Jun 17, 2024

    • iss_workshop2024

      Public
      Info page for workshop
      0•0•0•0•Updated Feb 22, 2024Feb 22, 2024

    • tracking_dlmbl_2022

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 24, 2022Aug 24, 2022

    • biophysics_imaging_retreat_2022

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 27, 2022Jun 27, 2022

    • ductales

      Public
      Java
      •0•1•0•0•Updated Jun 26, 2022Jun 26, 2022
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