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    • Transformer-based cell tracking for live-cell microscopy
      Python
      BSD 3-Clause "New" or "Revised" License
      2812861Updated Mar 31, 2026Mar 31, 2026
    • muvit

      Public
      Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.
      Python
      BSD 3-Clause "New" or "Revised" License
      23010Updated Mar 2, 2026Mar 2, 2026
    • DLAI_2025

      Public
      course material
      Jupyter Notebook
      1000Updated Feb 5, 2026Feb 5, 2026
    • spotiflow

      Public
      Accurate and efficient spot detection for microscopy data
      Python
      BSD 3-Clause "New" or "Revised" License
      1812251Updated Feb 5, 2026Feb 5, 2026
    • Spotiflow plugin for napari
      Python
      BSD 3-Clause "New" or "Revised" License
      11610Updated Feb 2, 2026Feb 2, 2026
    • BSD 3-Clause "New" or "Revised" License
      0000Updated Nov 13, 2025Nov 13, 2025
    • napari plugin for trackastra
      Python
      BSD 3-Clause "New" or "Revised" License
      21720Updated Nov 12, 2025Nov 12, 2025
    • BSD 3-Clause "New" or "Revised" License
      0000Updated Sep 19, 2025Sep 19, 2025
    • BCSS

      Public
      Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourcing enables convolution…
      Python
      MIT License
      23000Updated Sep 9, 2025Sep 9, 2025
    • Jupyter Notebook
      0300Updated Feb 15, 2025Feb 15, 2025
    • DLIA_24

      Public
      Seminar Deep Learning for image analysis
      0100Updated Dec 12, 2024Dec 12, 2024
    • tarrow

      Public
      Time arrow prediction for live-cell microscopy
      Python
      BSD 3-Clause "New" or "Revised" License
      72200Updated Jun 17, 2024Jun 17, 2024
    • Info page for workshop
      0000Updated Feb 22, 2024Feb 22, 2024
    • Jupyter Notebook
      0000Updated Aug 24, 2022Aug 24, 2022
    • Jupyter Notebook
      0000Updated Jun 27, 2022Jun 27, 2022
    • ductales

      Public
      Java
      0100Updated Jun 26, 2022Jun 26, 2022
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