Repositories list

• PathwaySpace

  Public
  PathwaySpace is an R package that creates landscape images from graphs containing vertices (nodes), edges (lines), and a signal associated with the vertices.

  bioinformaticsrgraph+ 1

  bioinformaticsrgraphbiological-networks

  R

  •22 forks•33 stars•00 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• RGraphSpace

  Public
  A lightweight package for representing large igraph objects in a normalized coordinate system

  R

  •00 forks•22 stars•00 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• SpotSpace

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• GeneBridge

  Public
  Rooting Orthologous Genes in Large-Scale Evolutionary Analysis.

  R

  •22 forks•77 stars•00 issues•00 pull requests•Updated Feb 25, 2026Feb 25, 2026

• TreeAndLeaf

  Public
  An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.

  binary-treer-packagebinary-tree-visualization+ 2

  binary-treer-packagebinary-tree-visualizationdendrogramreorganizing-dendrograms

  33 forks•1515 stars•00 issues•00 pull requests•Updated Feb 18, 2026Feb 18, 2026

• RedeR

  Public
  RedeRis a stand-alone Java application for interactive visualization and manipulation of nested networks.

  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 18, 2025Sep 18, 2025

• RTN

  Public
  Reconstruction of Transcriptional regulatory Networks and analysis of regulons

  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 18, 2025Sep 18, 2025

• alphafold

  Public
  Open source code for AlphaFold.

  Python

  •

  Apache License 2.0

  •2.6k2.6k forks•00 stars•00 issues•00 pull requests•Updated Jun 27, 2024Jun 27, 2024

• RTN_example_TCGA_LIHC

  Public
  Example of data preprocessing for RTNsurvival, using the TCGA-LIHC cohort

  R

  •55 forks•00 stars•00 issues•00 pull requests•Updated Jan 28, 2019Jan 28, 2019