Skip to content

@smaht-dac SMaHT Data Analysis Center

Change the repository type filter

All

    Repositories list

    22 repositories

    • smaht-portal

      Public
      SMaHT Data Analysis Center Web Portal
      JavaScript
      •
      MIT License
      •0•3•0•30•Updated Apr 20, 2026Apr 20, 2026

    • foursight-smaht

      Public
      foursight for smaht-portal
      Python
      •
      MIT License
      •0•0•0•3•Updated Apr 20, 2026Apr 20, 2026

    • main-pipelines

      Public
      main repository for SMaHT pipelines
      Dockerfile
      •
      GNU General Public License v3.0
      •0•4•0•2•Updated Apr 17, 2026Apr 17, 2026

    • calling-pipelines

      Public
      components for variant calling pipelines
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • shared-pipelines

      Public
      shared components for analysis pipelines
      Common Workflow Language
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated Apr 16, 2026Apr 16, 2026

    • submitr

      Public
      Python
      •
      MIT License
      •0•0•1•2•Updated Apr 13, 2026Apr 13, 2026

    • encoded-core

      Public
      Repository for data models common to Park Lab ENCODE style projects
      Python
      •
      MIT License
      •0•0•0•1•Updated Apr 9, 2026Apr 9, 2026

    • pipelines-docs

      Public
      pipelines documentation
      1•0•0•0•Updated Mar 25, 2026Mar 25, 2026

    • sentieon-pipelines

      Public
      sentieon components for analysis pipelines
      Shell
      •1•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • qc-pipelines

      Public
      components for quality control pipelines
      Common Workflow Language
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • rnaseq-pipelines

      Public
      components for RNA-seq pipelines
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 12, 2025Sep 12, 2025

    • smaht-pipeline-utils

      Public
      pipeline utilities
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 18, 2025Aug 18, 2025

    • qc-parser

      Public
      Parses outputs of different QC tools and unifies them for the SMaHT portal
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • pipelines-scripts

      Public
      Python
      •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

    • dmichaels-utils

      Public
      dmichaels-utils
      Python
      •
      Other
      •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • alignment-pipelines

      Public
      components for alignment pipelines
      Common Workflow Language
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • o2-processing-utils

      Public
      Tool for running and logging a couple of bioinformatics tools on O2 (HMS' HPC).
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2023Dec 18, 2023

    • higlass-misc

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Dec 4, 2023Dec 4, 2023

    • submitr-save

      Public
      This repo has been superseded. Do not use it. Ask David, Kent, or Will if you have questions.
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 26, 2023Sep 26, 2023

    • temporary-test-repo-A-forked

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 25, 2023Sep 25, 2023

    • dmichaels-temporary-experiment-of-import

      Public
      New submitr repo which will be an import of SubmitCGAP rather than a fork (will rename later)
      0•0•0•0•Updated Sep 25, 2023Sep 25, 2023

    • smaht-dac-governance

      Public
      Governance, legal and policy information related to the SMaHT DAC's various tools and applications
      MIT License
      •2•0•0•0•Updated Sep 5, 2023Sep 5, 2023
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.