Skip to content
Change the repository type filter

All

    Repositories list

    • Front end website for the Simularium project, includes the Simularium viewer
      TypeScript
      Apache License 2.0
      675614Updated Apr 10, 2026Apr 10, 2026
    • NPM package to view Simularium trajectories in 3D
      TypeScript
      Apache License 2.0
      235514Updated Apr 10, 2026Apr 10, 2026
    • Python package that converts simulation outputs to the format consumed by the Simularium viewer website
      Python
      Apache License 2.0
      75225Updated Apr 9, 2026Apr 9, 2026
    • [pre-release] Calculate plot metrics from spatial agent data
      Python
      Apache License 2.0
      0021Updated Apr 2, 2026Apr 2, 2026
    • TypeScript
      Other
      00212Updated Mar 27, 2026Mar 27, 2026
    • Simulation, analysis, and visualization functionality for subcellular models
      Python
      BSD 3-Clause "New" or "Revised" License
      1223Updated Jan 1, 2026Jan 1, 2026
    • Tools for building computational biology models in ReaDDy.
      Python
      BSD 3-Clause "New" or "Revised" License
      10114Updated Mar 28, 2025Mar 28, 2025
    • nbsv

      Public
      TypeScript
      BSD 3-Clause "New" or "Revised" License
      0030Updated Jan 16, 2025Jan 16, 2025
    • Website for subcellular models
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      0100Updated Dec 19, 2024Dec 19, 2024
    • Unity VR/AR project for Simularium data
      C#
      Apache License 2.0
      1000Updated Dec 13, 2024Dec 13, 2024
    • Cytosim

      Public
      A fork of Cytosim, a cytoskeleton simulation engine (from https://gitlab.com/f-nedelec/cytosim)
      C++
      GNU General Public License v3.0
      0400Updated Aug 30, 2024Aug 30, 2024
    • Prototype web pages for comparing simulation trajectories.
      JavaScript
      Apache License 2.0
      0000Updated Feb 17, 2024Feb 17, 2024
    • View lists of .simularium files in public AWS S3 buckets and load them in the Simularium viewer.
      HTML
      Apache License 2.0
      303000Updated Feb 14, 2024Feb 14, 2024
    • Apache License 2.0
      00940Updated Feb 5, 2024Feb 5, 2024
    • Apache License 2.0
      0050Updated Jul 11, 2023Jul 11, 2023
    • AWS Lambda functions for Simularium
      Python
      Apache License 2.0
      0000Updated Jul 11, 2023Jul 11, 2023
    • Python
      Apache License 2.0
      1074Updated May 23, 2023May 23, 2023
    • C++ back end application that interfaces with biological simulation engines and serves simulation data to the front end website
      C++
      Apache License 2.0
      00160Updated Apr 21, 2023Apr 21, 2023
    • medyan

      Public
      C++
      Other
      1000Updated Jun 8, 2022Jun 8, 2022
    • PhysiCell

      Public
      PhysiCell: Scientist end users should use latest release! Bugfixes should be submitted to the development branch.
      C++
      114000Updated Apr 20, 2020Apr 20, 2020
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.