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@regulomics regulatory genomics group at University of Warsaw

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    26 repositories

    • RegSeqNet

      Public
      Identification of regulatory regions active in human brain using neural networks.
      Python
      •3•0•0•0•Updated Apr 8, 2024Apr 8, 2024

    • chrom_mc

      Public
      Python
      •1•0•0•0•Updated Dec 21, 2021Dec 21, 2021

    • chroMC

      Public
      Python
      •1•1•0•0•Updated Nov 28, 2021Nov 28, 2021

    • HERON

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Jul 22, 2021Jul 22, 2021

    • diffcog

      Public
      Python
      •1•0•0•0•Updated Mar 19, 2021Mar 19, 2021

    • HiCEnterprise

      Public
      Establish contact between chromatin regions!
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • biopython

      Public
      Official git repository for Biopython (converted from CVS)
      Python
      •
      Other
      •1.9k•0•0•6•Updated Feb 26, 2020Feb 26, 2020

    • IMCA_v2

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Nov 8, 2019Nov 8, 2019

    • expansion-network

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 9, 2019Aug 9, 2019

    • ChromosomeVisualizer

      Public
      An efficient and flexible, modern implementation of chromosome visualising software allowing for viewing simulation trajectories as well as rendering high quali…
      C++
      •
      GNU Lesser General Public License v3.0
      •2•0•0•0•Updated Jul 9, 2019Jul 9, 2019

    • DIADEM

      Public
      Differential analysis via dependency modelling of chromatin interactions with generalized linear models.
      R
      •
      MIT License
      •1•0•0•0•Updated May 7, 2019May 7, 2019

    • alzheimer_classification

      Public
      Classification of patients with Alzheimer's disease based on DNA polymorphisms.
      Python
      •3•1•0•0•Updated Apr 30, 2019Apr 30, 2019

    • IMCA

      Public
      IMCA - Improving Mapping with Contigs Assembly
      Python
      •
      Other
      •1•0•0•0•Updated Jan 15, 2019Jan 15, 2019

    • bp-metric

      Public
      Metric for comparisons of chromosome (TAD) segmentations.
      Python
      •3•0•0•0•Updated May 25, 2018May 25, 2018

    • pendolino-1

      Public
      SBS-chromatin simulation package
      Python
      •1•0•0•0•Updated Mar 30, 2018Mar 30, 2018

    • pendolino

      Public
      Python
      •1•0•0•0•Updated Mar 30, 2018Mar 30, 2018

    • mgplot

      Public
      Python
      •1•0•0•0•Updated Aug 29, 2017Aug 29, 2017

    • sherpa

      Public
      Simple HiErarchical Pearson Aggregation
      Python
      •0•0•0•0•Updated Jul 14, 2017Jul 14, 2017

    • motionsPython

      Public
      Python
      •1•0•0•0•Updated Dec 22, 2016Dec 22, 2016

    • enhancer_prediction

      Public
      Machine learning approach to predict enhancers
      Python
      •3•1•0•1•Updated Nov 6, 2016Nov 6, 2016

    • motions

      Public
      Haskell
      •
      Apache License 2.0
      •3•0•0•0•Updated May 19, 2016May 19, 2016

    • oppa

      Public
      Optimal PCA-like Profile Aggregation
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 12, 2016Mar 12, 2016

    • prototype

      Public
      Haskell
      •
      Other
      •1•0•0•0•Updated Jan 4, 2016Jan 4, 2016

    • long_inter

      Public
      Python
      •1•0•0•0•Updated Dec 18, 2015Dec 18, 2015

    • bnfinder

      Public
      BNFInder - tool for learning bayesian networks
      Python
      •
      GNU General Public License v2.0
      •9•0•0•0•Updated Mar 9, 2015Mar 9, 2015

    • stops2

      Public
      Python
      •1•0•0•0•Updated Jun 6, 2014Jun 6, 2014
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