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    11 repositories

    • MATCH

      Public
      Workshop materials and code snippets for the MATCH Project, part of the NIH AIM-AHEAD Data and Infrastructure Building (DICB) program
      workshoptutorialscontinual-learninggenerative-ai
      Jupyter Notebook
      •
      MIT License
      •0•5•0•0•Updated Sep 8, 2025Sep 8, 2025

    • cytoNet

      Public
      scripts associated with cytoNet image analysis software
      MATLAB
      •2•2•0•0•Updated Sep 19, 2021Sep 19, 2021

    • Shrinkage-Clustering

      Public
      This is an R package of the Shrinkage Clustering algorithm.
      R
      •0•0•0•0•Updated May 8, 2018May 8, 2018

    • GAIN

      Public
      GAIN: A graphical method to automatically analyze individual neurite outgrowth
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Mar 10, 2017Mar 10, 2017

    • Transcription-Site-Image-Processing

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 3, 2016Aug 3, 2016

    • Adhesion-Site-Metric

      Public
      Matlab code to compare cell adhesion sites
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 18, 2016May 18, 2016

    • Fiber-Alignment-Metric

      Public
      Matlab code that compares the alignment of fibers in one cell to that of another
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 17, 2016May 17, 2016

    • Extreme-Pathways

      Public
      Extreme Pathways decompose the solution space of genome scale metabolic models.
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 16, 2016May 16, 2016

    • corsoFBA

      Public
      The cost-reduced, sub-optimal FBA (corsoFBA) algorithm performs sub-optimal flux balance analysis based on defined reaction costs.
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 16, 2016May 16, 2016

    • CORDA

      Public
      The Cost Optimization Reaction Dependency Assessment (CORDA) algorithm builds tissue specific metabolic reconstructions based on experimental data and generalized, genome-wide metabolic reconstructions.
      MATLAB
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated May 16, 2016May 16, 2016

    • General-Angiogensis-Model

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated May 13, 2016May 13, 2016