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    15 repositories

    • pyranges_1.x

      Public
      Pyranges: a Python framework for ultrafast sequence interval operations
      Python
      •
      MIT License
      •6•36•8•0•Updated Jan 1, 2026Jan 1, 2026

    • ruranges

      Public
      Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
      Rust
      •
      MIT License
      •4•29•5•0•Updated Dec 18, 2025Dec 18, 2025

    • sorted_nearest

      Public
      Cython helper library for pyranges. Find nearest interval in linear time at C speed.
      Cython
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•3•2•Updated Nov 30, 2025Nov 30, 2025

    • pyranges

      Public
      Performant Pythonic GenomicRanges
      pythongenomicspandasdata-structuresgenomicranges
      Python
      •
      MIT License
      •50•492•86•6•Updated Oct 28, 2025Oct 28, 2025

    • pyrangeyes

      Public
      Gene visualization package for dataframe objects generated with PyRanges
      Python
      •
      MIT License
      •3•3•5•0•Updated Oct 1, 2025Oct 1, 2025

    • benchmarks

      Public
      Python
      •1•1•0•0•Updated Sep 22, 2025Sep 22, 2025

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.7k•0•0•1•Updated Sep 12, 2025Sep 12, 2025

    • ncls

      Public
      NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.
      pythonnumpyinterval-treenclsoverlap-queries
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •24•224•11•5•Updated Jul 4, 2025Jul 4, 2025

    • bamread

      Public
      Bam to Pandas DataFrame, quickly
      Cython
      •8•13•3•2•Updated May 10, 2025May 10, 2025

    • pyrle

      Public
      Numerical Run Length Encoding and Arithmetic in Cython
      Python
      •
      MIT License
      •4•19•4•3•Updated Mar 18, 2025Mar 18, 2025

    • bwread

      Public
      Read bigwig into pyranges or dataframe
      Cython
      •0•6•0•1•Updated Sep 3, 2024Sep 3, 2024

    • pyranges_example_data

      Public
      Example data for pyranges
      0•0•0•0•Updated Dec 16, 2023Dec 16, 2023

    • pyranges_db

      Public
      pyranges add-on to fetch annotation data from UCSC, gencode and ensembl
      Python
      •0•0•0•0•Updated Feb 3, 2020Feb 3, 2020

    • fishers_exact_test

      Public
      Fishers Exact Test for Python (Cython)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •23•0•0•0•Updated Oct 2, 2019Oct 2, 2019

    • pyranges.github.io

      Public
      PyRanges docs
      R
      •0•0•0•0•Updated Oct 25, 2018Oct 25, 2018