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@physimals Physimals group, University of Nottingham

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    71 repositories

    • oxasl_optpcasl

      Public
      Python library for optimizing PLDs of a multi-PLD pCASL acquisition. Ported from Joe Woods' MATLAB code
      Python
      •
      Apache License 2.0
      •3•1•0•0•Updated Nov 7, 2025Nov 7, 2025

    • hcp-asl

      Public
      ASL pipeline for the Human Connectome Project
      Python
      •
      Apache License 2.0
      •5•13•1•0•Updated Oct 2, 2025Oct 2, 2025

    • oxasl

      Public
      Python based ASL pipeline based on oxford_asl
      Python
      •
      Apache License 2.0
      •8•5•13•1•Updated Sep 26, 2025Sep 26, 2025

    • oxasl_multite

      Public
      OXASL plugin for multi-TE ASL data
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

    • asl-docs

      Public
      Documentation for ASL tools (BASIL, oxford_asl, etc)
      Python
      •3•1•1•1•Updated Jun 25, 2025Jun 25, 2025

    • fabber_models_asl

      Public
      Forward models using the Fabber framework for Arterial Spin Labelling MRI
      C++
      •
      Apache License 2.0
      •5•1•1•0•Updated May 8, 2025May 8, 2025

    • oxasl_ve

      Public
      OXASL plugin for vessel-encoded ASL data
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • oxasl_enable

      Public
      OXASL plugin which allows volume selection for quality improvement using the ENABLE algorithm
      Python
      •
      Other
      •0•1•3•0•Updated Nov 27, 2024Nov 27, 2024

    • tilda_asl

      Public
      Analysis pipeline code for ASL data from The Irish Longitudinal stuDy on Ageing
      Jupyter Notebook
      •0•1•0•0•Updated Nov 25, 2024Nov 25, 2024

    • quantiphyse

      Public
      Application for analysis and modelling of volumetric medical imaging data
      Python
      •
      Apache License 2.0
      •3•30•10•0•Updated May 15, 2024May 15, 2024

    • vaby_svb

      Public
      Stochastic variational bayes using the vaby framework
      Python
      •0•3•0•0•Updated Apr 4, 2024Apr 4, 2024

    • oxasl_mp

      Public
      OXASL plugin for multiphase ASL data
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

    • oxasl_deblur

      Public
      Perform z-deblurring of ASL data
      Python
      •
      Other
      •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

    • svb_models_asl

      Public
      ASL Models for Stochastic Variational Bayes inference framework
      Python
      •
      Apache License 2.0
      •0•1•1•0•Updated Mar 22, 2024Mar 22, 2024

    • vaby_models_dti

      Public
      VABY forward models for diffusion tensor imaging
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Jan 4, 2024Jan 4, 2024

    • vaby_mcmc

      Public
      MCMC implementation for VABY
      Python
      •0•0•0•0•Updated Jan 4, 2024Jan 4, 2024

    • pyfab

      Public
      Python inferface to the Fabber Bayesian model fitting toolkit
      Python
      •
      Apache License 2.0
      •1•0•4•0•Updated Nov 3, 2023Nov 3, 2023

    • basil-qmenta

      Public
      Code to define a Docker container that can be used to run Basil within the QMENTA platform
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

    • quantiphyse-dce

      Public
      Quantiphyse plugin for DCE-MRI modelling
      C++
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 4, 2023Sep 4, 2023

    • asl_primer

      Public
      ASL primer exercises as made available via the Primer website (hosted on FMRIB webserver)
      HTML
      •0•0•0•0•Updated Sep 1, 2023Sep 1, 2023

    • physimals

      Public
      Physimals Website
      SCSS
      •0•0•0•2•Updated Jul 21, 2023Jul 21, 2023

    • vaby_models_cvr

      Public
      VB models for CVR-MRI with PETCO2
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

    • oxford_asl

      Public
      A command line tool for quantification of perfusion from ASL data
      Shell
      •
      Apache License 2.0
      •7•12•12•2•Updated Jul 13, 2023Jul 13, 2023

    • fabber_models_qbold

      Public
      Fabber models for Quantitative BOLD MRI
      C++
      •
      Apache License 2.0
      •4•1•0•0•Updated May 25, 2023May 25, 2023

    • oxasl_bids

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 18, 2023Apr 18, 2023

    • maskSLIC

      Public
      Simple linear iterative clustering (SLIC) in a region of interest (ROI)
      Python
      •
      Other
      •9•1•0•0•Updated Mar 13, 2023Mar 13, 2023

    • quantiphyse-t1

      Public
      Quantiphyse plugin for Bayesian T1 mapping from VFA data
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 13, 2023Mar 13, 2023

    • quantiphyse-fsl

      Public
      Quantiphyse plugin providing interface to selected tools from the FMRIB Software Library (FSL)
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 13, 2023Mar 13, 2023

    • quantiphyse-cvr

      Public
      Quantiphyse widget for analysing cerebrovascular reactivity (CVR)
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Mar 10, 2023Mar 10, 2023

    • vaby

      Public
      Core variational bayes code in Python to be shared between SVB and AVB
      Python
      •
      Apache License 2.0
      •1•2•0•0•Updated Mar 10, 2023Mar 10, 2023