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@pcdslab Precision Computational Health and Biomedical Data Science Lab (Saeed Lab)

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    45 repositories

    • ProtEnrich

      Public
      Python
      •0•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • PCDSLab.github.io

      Public template
      Website for the Precision Computational Health and Biomedical Data Science Lab (Saeed Lab) at FIU
      HTML
      •67•1•0•0•Updated Mar 9, 2026Mar 9, 2026

    • dom-formula-assignment-using-ml

      Public
      Python
      •0•0•0•0•Updated Feb 8, 2026Feb 8, 2026

    • GKAN

      Public
      0•0•0•0•Updated Feb 1, 2026Feb 1, 2026

    • MolDeBERTa

      Public
      Python
      •0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • TITAN-BBB

      Public
      Python
      •0•0•0•0•Updated Jan 17, 2026Jan 17, 2026

    • FIU-Qiskit-Fallfest-2025

      Public
      Official FIU Qiskit Fallfest 2025 Site
      MIT License
      •0•2•3•0•Updated Sep 16, 2025Sep 16, 2025

    • Autoencoder-fMRI-Harmonization

      Public
      Roff
      •0•1•0•0•Updated Sep 2, 2025Sep 2, 2025

    • MLSPred-Bench

      Public
      MLSPred-Bench: Reference EEG Benchmark for Prediction of Epileptic Seizures
      Jupyter Notebook
      •
      MIT License
      •3•3•0•0•Updated Sep 2, 2025Sep 2, 2025

    • mobility-web-app

      Public
      1•0•0•0•Updated Apr 11, 2025Apr 11, 2025

    • .github

      Public
      0•0•0•0•Updated Mar 2, 2025Mar 2, 2025

    • MAESTRO

      Public
      An interconnected set of open source machine-learning models for large-scale mass spectrometry based omics analysis.
      Python
      •1•1•0•0•Updated Feb 19, 2025Feb 19, 2025

    • ProteoRift

      Public
      End-to-end machine-learning pipeline for peptide database search
      Jupyter Notebook
      •
      Other
      •2•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • SpeCollate

      Public
      Jupyter Notebook
      •
      Other
      •1•1•0•0•Updated Oct 25, 2024Oct 25, 2024

    • empirical-seizure-study

      Public
      0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • GiCOPS

      Public
      HiCOPS & GiCOPS : Computational framework for peptide identification from MS data through accelerated database search
      C++
      •
      Other
      •1•2•1•0•Updated Sep 10, 2024Sep 10, 2024

    • UtilLLM_EPS

      Public
      Python
      •1•5•1•1•Updated Aug 23, 2024Aug 23, 2024

    • ASD-DiagNet

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •17•32•0•0•Updated Jul 12, 2024Jul 12, 2024

    • SPERTL

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 23, 2024Jun 23, 2024

    • PVTAD

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Apr 24, 2024Apr 24, 2024

    • Graph-DOM

      Public
      Graph-DOM is a tool to analyze comprehensive fragmentation data for dissolved organic matter (DOM) using graph algorithms.
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • ASD-SAENet

      Public
      Python
      •
      GNU General Public License v3.0
      •2•5•2•0•Updated Jan 9, 2024Jan 9, 2024

    • mspconverter

      Public
      A package to convert tandem mass spectra files from MSP to MGF format
      Python
      •1•2•0•0•Updated Dec 17, 2023Dec 17, 2023

    • ASD-DiagNet-Confounds

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • specollate-page

      Public
      Webpage for SpeCollate
      HTML
      •
      Other
      •0•1•0•0•Updated Jun 23, 2023Jun 23, 2023

    • Instruction_roofline_scripts

      Public
      Instruction Roofline Scripts for GiCOPS and ADEPT
      Python
      •3•0•0•0•Updated Oct 29, 2022Oct 29, 2022

    • slmindex

      Public
      SLM-Transform: Fast and Memory-Efficient MS/MS Spectra Indexing for Peptide Search in Mass-Spectrometry based Proteomics
      C
      •
      GNU General Public License v3.0
      •0•5•0•0•Updated Aug 5, 2022Aug 5, 2022

    • TurboBC

      Public
      A memory efficient and highly scalable GPU-based set of Betweenness Centrality (BC) algorithms in the language of linear algebra.
      C
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 7, 2021Sep 7, 2021

    • TurboBFS

      Public
      A highly scalable GPU-based set of top-down and bottom-up BFS algorithms in the language of  linear algebra.
      C
      •
      GNU General Public License v3.0
      •4•4•0•0•Updated May 20, 2021May 20, 2021

    • MSREDUCE

      Public
      source code for MSREDUCE
      Java
      •
      GNU General Public License v3.0
      •2•1•1•0•Updated Feb 8, 2021Feb 8, 2021