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    • Python
      0000Updated Mar 10, 2026Mar 10, 2026
    • PCDSLab.github.io

      Public template
      Website for the Precision Computational Health and Biomedical Data Science Lab (Saeed Lab) at FIU
      HTML
      67100Updated Mar 9, 2026Mar 9, 2026
    • Python
      0000Updated Feb 8, 2026Feb 8, 2026
    • GKAN

      Public
      0000Updated Feb 1, 2026Feb 1, 2026
    • Python
      0000Updated Jan 22, 2026Jan 22, 2026
    • TITAN-BBB

      Public
      Python
      0000Updated Jan 17, 2026Jan 17, 2026
    • Official FIU Qiskit Fallfest 2025 Site
      MIT License
      0230Updated Sep 16, 2025Sep 16, 2025
    • Roff
      0100Updated Sep 2, 2025Sep 2, 2025
    • MLSPred-Bench: Reference EEG Benchmark for Prediction of Epileptic Seizures
      Jupyter Notebook
      MIT License
      3300Updated Sep 2, 2025Sep 2, 2025
    • 1000Updated Apr 11, 2025Apr 11, 2025
    • .github

      Public
      0000Updated Mar 2, 2025Mar 2, 2025
    • MAESTRO

      Public
      An interconnected set of open source machine-learning models for large-scale mass spectrometry based omics analysis.
      Python
      1100Updated Feb 19, 2025Feb 19, 2025
    • End-to-end machine-learning pipeline for peptide database search
      Jupyter Notebook
      Other
      2000Updated Feb 19, 2025Feb 19, 2025
    • Jupyter Notebook
      Other
      1100Updated Oct 25, 2024Oct 25, 2024
    • 0000Updated Oct 25, 2024Oct 25, 2024
    • GiCOPS

      Public
      HiCOPS & GiCOPS : Computational framework for peptide identification from MS data through accelerated database search
      C++
      Other
      1210Updated Sep 10, 2024Sep 10, 2024
    • Python
      1511Updated Aug 23, 2024Aug 23, 2024
    • Jupyter Notebook
      GNU General Public License v3.0
      173200Updated Jul 12, 2024Jul 12, 2024
    • SPERTL

      Public
      Jupyter Notebook
      0000Updated Jun 23, 2024Jun 23, 2024
    • PVTAD

      Public
      Jupyter Notebook
      Other
      0000Updated Apr 24, 2024Apr 24, 2024
    • Graph-DOM

      Public
      Graph-DOM is a tool to analyze comprehensive fragmentation data for dissolved organic matter (DOM) using graph algorithms.
      Python
      GNU General Public License v3.0
      4000Updated Feb 19, 2024Feb 19, 2024
    • Python
      GNU General Public License v3.0
      2520Updated Jan 9, 2024Jan 9, 2024
    • A package to convert tandem mass spectra files from MSP to MGF format
      Python
      1200Updated Dec 17, 2023Dec 17, 2023
    • Python
      GNU General Public License v3.0
      0000Updated Aug 16, 2023Aug 16, 2023
    • Webpage for SpeCollate
      HTML
      Other
      0100Updated Jun 23, 2023Jun 23, 2023
    • Instruction Roofline Scripts for GiCOPS and ADEPT
      Python
      3000Updated Oct 29, 2022Oct 29, 2022
    • slmindex

      Public
      SLM-Transform: Fast and Memory-Efficient MS/MS Spectra Indexing for Peptide Search in Mass-Spectrometry based Proteomics
      C
      GNU General Public License v3.0
      0500Updated Aug 5, 2022Aug 5, 2022
    • TurboBC

      Public
      A memory efficient and highly scalable GPU-based set of Betweenness Centrality (BC) algorithms in the language of linear algebra.
      C
      GNU General Public License v3.0
      1000Updated Sep 7, 2021Sep 7, 2021
    • TurboBFS

      Public
      A highly scalable GPU-based set of top-down and bottom-up BFS algorithms in the language of  linear algebra.
      C
      GNU General Public License v3.0
      4400Updated May 20, 2021May 20, 2021
    • MSREDUCE

      Public
      source code for MSREDUCE
      Java
      GNU General Public License v3.0
      2110Updated Feb 8, 2021Feb 8, 2021