Repositories list

• notifications

  Public
  Notifications for Pathoplexus submissions

  Python

  •

  GNU Affero General Public License v3.0

  •0•1•1•0•Updated Mar 25, 2026Mar 25, 2026

• ena-submission

  Public
  This repo should be used for uploading sequences that have been approved for release to ENA

  Python

  •0•0•11•0•Updated Mar 25, 2026Mar 25, 2026

• pathoplexus

  Public
  An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.

  bioinformaticspublic-healthdata-sharing+ 3

  bioinformaticspublic-healthdata-sharingvirus-evolutionsequencing-datavirus-sequences

  MDX

  •

  GNU Affero General Public License v3.0

  •7•52•103•10•Updated Mar 25, 2026Mar 25, 2026

• loculus_deployments

  Public
  Gitops definitions for Pathoplexus' Loculus deployments

  0•1•2•1•Updated Mar 25, 2026Mar 25, 2026

• announcement_banners

  Public
  0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

• silo-lineage-hierarchy-definitions

  Public
  Repository to keep SILO lineage hierarchy definition files

  Python

  •

  GNU Affero General Public License v3.0

  •2•1•0•2•Updated Mar 12, 2026Mar 12, 2026

• example_data

  Public
  Example data for users to try out Pathoplexus

  1•3•0•0•Updated Mar 12, 2026Mar 12, 2026

• dev_example_data

  Public
  1•0•0•2•Updated Mar 11, 2026Mar 11, 2026

• curation_data

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 2, 2026Mar 2, 2026

• curation_reports

  Public
  Curation reports for Pathoplexus

  0•4•7•0•Updated Feb 19, 2025Feb 19, 2025