Repositories list

• fans_genome_assembly

  Public
  Code used to process, assemble, and annotate the Ansell's mole-rat genome

  Shell

  •0•0•0•0•Updated Feb 3, 2026Feb 3, 2026

• xist_project

  Public
  HTML

  •0•1•0•0•Updated Dec 19, 2025Dec 19, 2025

• fourcore_transloc

  Public
  Python

  •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

• molgenis-docker

  Public
  Dockerfiles and docker-compose for MOLGENIS

  Dockerfile

  •

  GNU Lesser General Public License v3.0

  •19•0•0•0•Updated Jun 25, 2025Jun 25, 2025

• scir

  Public
  Analysis toolkit for sci-RNA-seqv3 data.

  R

  •

  GNU General Public License v3.0

  •0•0•4•0•Updated May 31, 2024May 31, 2024

• manuscript_scirocket

  Public
  Accompanying code to sci-rocket manuscript

  R

  •

  MIT License

  •0•0•0•0•Updated Mar 11, 2024Mar 11, 2024

• Single-Mitosis-LSE

  Public
  R scripts and supplemental tables for Ginno et al., 2024

  R

  •0•1•0•0•Updated Mar 6, 2024Mar 6, 2024

• snakemake-capturehic

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 14, 2024Feb 14, 2024

• snakemake-cellranger

  Public
  Snakemake workflow to run cellranger on multiple samples within the ODCF database

  Jupyter Notebook

  •0•0•2•1•Updated Mar 30, 2023Mar 30, 2023

• snakemake-snpmasked-refgenome

  Public
  Snakemake workflow to inject SNPs from a strain into a the mouse refrence genome and create a cellranger index

  Python

  •1•0•0•0•Updated May 2, 2022May 2, 2022

• metadata-submission

  Public
  Track the metadata submission spreadsheet and related files

  Python

  •

  MIT License

  •0•0•4•0•Updated Aug 2, 2021Aug 2, 2021