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    10 repositories

    • lcdb-wf

      Public
      Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
      Python
      •17•23•64•15•Updated Jan 31, 2026Jan 31, 2026

    • lcdb-wf-variant-calling-test-data

      Public
      Small data set for testing lcdb-wf variant calling workflow
      Python
      •
      MIT License
      •0•1•0•0•Updated Nov 13, 2025Nov 13, 2025

    • lcdb-containers

      Public
      Singularity
      •0•0•0•0•Updated May 13, 2023May 13, 2023

    • github-action-testing

      Public
      testing grounds for github actions
      Dockerfile
      •0•0•0•0•Updated Nov 29, 2020Nov 29, 2020

    • lcdb-test-data-human

      Public
      Test data creation and storage (human version)
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 21, 2020Oct 21, 2020

    • lcdb-test-data

      Public
      Test data creation and storage
      Python
      •
      MIT License
      •1•2•1•1•Updated Sep 15, 2020Sep 15, 2020

    • lcdblib

      Public
      A set of useful helper functions for doing NGS analysis with snakemake.
      Python
      •
      MIT License
      •1•1•3•2•Updated Oct 2, 2019Oct 2, 2019

    • lcdb-workflows

      Public
      DEPRECATED. Please see https://github.com/lcdb/lcdb-wf
      Python
      •
      MIT License
      •0•1•7•2•Updated Apr 12, 2019Apr 12, 2019

    • genomics-workshop-2018

      Public
      Repostory with materials for the 2018 LCDB Genomics Workshop
      HTML
      •
      BSD 2-Clause "Simplified" License
      •2•5•0•0•Updated Mar 12, 2018Mar 12, 2018

    • lcdb-wrapper-tests

      Public
      Experimental Snakemake wrapper testing framework.
      Python
      •
      MIT License
      •0•1•7•2•Updated Mar 22, 2017Mar 22, 2017