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    • TypeScript
      0300Updated Apr 18, 2026Apr 18, 2026
    • MATLAB code for 3D particle track visualization, MSD analysis, and simulations to quantify viral motion in expanded endosomes upon PIKfyve inhibition.
      MATLAB
      MIT License
      0000Updated Apr 17, 2026Apr 17, 2026
    • Python
      MIT License
      0514Updated Apr 9, 2026Apr 9, 2026
    • incasem

      Public
      Automated Segmentation of cellular substructures in Electron Microscopy
      Python
      BSD 3-Clause "New" or "Revised" License
      21820Updated Jan 28, 2026Jan 28, 2026
    • Interactive imaging viewer for multi-channel time-series microscopy data
      Python
      MIT License
      0100Updated Aug 28, 2025Aug 28, 2025
    • Cryosamba

      Public
      Python
      MIT License
      31342Updated Aug 14, 2025Aug 14, 2025
    • Pipeline for segmenting nuclei and masking corresponding fluorescent signals
      Python
      0000Updated Jul 15, 2025Jul 15, 2025
    • TKLabWIKI

      Public
      HTML
      0000Updated Mar 26, 2025Mar 26, 2025
    • Pytorch Models
      Python
      12000Updated Oct 1, 2024Oct 1, 2024
    • Interfaces for data (arrays and graphs) and storage formats (databases and file formats)
      Python
      MIT License
      12000Updated Oct 1, 2024Oct 1, 2024
    • A package for Coordinates, Rois and common operations in Coordinate spaces
      Python
      MIT License
      4000Updated Apr 26, 2024Apr 26, 2024
    • Scripts and helpers for the neuroglancer WebGL viewer.
      Python
      12000Updated Apr 17, 2024Apr 17, 2024
    • Annotation-based organelle segmentation using graph cuts
      Python
      GNU General Public License v3.0
      0210Updated Jan 31, 2024Jan 31, 2024
    • 0000Updated Feb 9, 2023Feb 9, 2023
    • Latex code for making neural networks diagrams
      Python
      MIT License
      3.1k000Updated Feb 10, 2022Feb 10, 2022
    • Start the deskew after the sample has completed all the acquisition
      MATLAB
      0000Updated Sep 7, 2021Sep 7, 2021
    • lsd

      Public
      🌈
      Python
      42000Updated Jun 16, 2021Jun 16, 2021
    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      Python
      MIT License
      58000Updated Mar 12, 2021Mar 12, 2021
    • Python
      12000Updated Sep 10, 2020Sep 10, 2020
    • sacred

      Public
      Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
      Python
      MIT License
      391000Updated Jul 15, 2020Jul 15, 2020
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