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    • This repository contains metadata information for PCAWG WGS/RNA-Seq/Validation datasets
      Python
      2100Updated Mar 26, 2026Mar 26, 2026
    • vcfqc

      Public
      Python
      MIT License
      0000Updated Sep 25, 2025Sep 25, 2025
    • dnaalnqc

      Public
      ICGC-ARGO workflow for DNA-Seq alignment QC
      mupad
      MIT License
      1400Updated Sep 25, 2025Sep 25, 2025
    • ICGC ARGO variant calling pipeline which digest xml to vcf variant format
      Python
      GNU Affero General Public License v3.0
      0000Updated Jul 10, 2025Jul 10, 2025
    • A repository to capture genes targeted by WES and target-Seq from ICGC-ARGO projects
      MIT License
      0000Updated Jun 26, 2025Jun 26, 2025
    • prealnqc

      Public
      Python
      MIT License
      0000Updated May 26, 2025May 26, 2025
    • ARGO specific modules using nf-core framework
      HTML
      MIT License
      0031Updated Apr 25, 2025Apr 25, 2025
    • ICGC ARGO Mutational Signatures Workflow Packages
      Nextflow
      MIT License
      0300Updated Oct 28, 2024Oct 28, 2024
    • ICGC ARGO Workflow for VCF Annotation
      GNU Affero General Public License v3.0
      0000Updated Oct 17, 2024Oct 17, 2024
    • rnaaln

      Public
      ICGC ARGO Workflow for RNA-Seq Alignment
      GNU Affero General Public License v3.0
      0001Updated Sep 23, 2024Sep 23, 2024
    • dnaaln

      Public
      ICGC ARGO Workflow for DNA-Seq Alignment
      Nextflow
      MIT License
      0000Updated Aug 20, 2024Aug 20, 2024
    • ICGC ARGO DNA-Seq Processing Workflow
      Nextflow
      GNU Affero General Public License v3.0
      4520Updated Jul 23, 2024Jul 23, 2024
    • Reference files used by the ICGC-ARGO data analysis pipelines
      GNU Affero General Public License v3.0
      0010Updated Jul 3, 2024Jul 3, 2024
    • RNA-Seq alignment packages
      Nextflow
      MIT License
      1500Updated Apr 18, 2024Apr 18, 2024
    • ICGC-ARGO Sanger WGS Somatic Variant Calling Workflow
      Nextflow
      GNU Affero General Public License v3.0
      3430Updated Mar 26, 2024Mar 26, 2024
    • Nextflow
      MIT License
      0100Updated Jan 2, 2024Jan 2, 2024
    • Nextflow
      MIT License
      0000Updated Jun 30, 2023Jun 30, 2023
    • Nextflow
      GNU Affero General Public License v3.0
      1100Updated Jun 29, 2023Jun 29, 2023
    • ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
      Nextflow
      GNU Affero General Public License v3.0
      2010Updated Jun 29, 2023Jun 29, 2023
    • ICGC-ARGO Sanger WXS Somatic Variant Calling Workflow
      Nextflow
      GNU Affero General Public License v3.0
      1000Updated Jun 29, 2023Jun 29, 2023
    • Collection of utility tools for ARGO data processing
      Python
      GNU Affero General Public License v3.0
      2000Updated Jun 8, 2023Jun 8, 2023
    • Nextflow implementation of https://github.com/icgc-argo/data-processing-utility-tools
      Nextflow
      Apache License 2.0
      1020Updated May 30, 2023May 30, 2023
    • ase

      Public
      ICGC-ARGO pipeline for analysis of allele specific expression (ASE) based on RNA-seq data
      0000Updated May 2, 2023May 2, 2023
    • Python
      GNU Affero General Public License v3.0
      1000Updated Mar 9, 2023Mar 9, 2023
    • Data simulation scripts for RNA-Seq working group
      Python
      0000Updated Nov 3, 2022Nov 3, 2022
    • Allele Specific Expression (ASE) analysis package
      Python
      MIT License
      1600Updated Aug 16, 2022Aug 16, 2022
    • Collection of ARGO data quality tool packages
      HTML
      MIT License
      1100Updated Jun 28, 2022Jun 28, 2022
    • A collection of DNA processing tools / modules used in the ICGC ARGO alignment workflow
      Python
      GNU Affero General Public License v3.0
      1310Updated Jun 23, 2022Jun 23, 2022
    • GATK Variant Calling for RNA-Seq
      Python
      GNU Affero General Public License v3.0
      0000Updated May 26, 2022May 26, 2022
    • Overview of ICGC-ARGO Analysis Pipelines
      GNU Affero General Public License v3.0
      0100Updated May 18, 2022May 18, 2022
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