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    • orobas

      Public
      R
      MIT License
      0000Updated Apr 10, 2026Apr 10, 2026
    • GIN

      Public
      Jupyter Notebook
      MIT License
      0100Updated Feb 24, 2026Feb 24, 2026
    • qGI

      Public
      Documented R code for the identification of quantitative genetic interactions from CRISPR screens
      R
      MIT License
      2000Updated Feb 23, 2026Feb 23, 2026
    • DeepSLP

      Public
      Leveraging cancer dependency data to predict synthetic lethality in human cells
      MIT License
      0000Updated Jul 18, 2025Jul 18, 2025
    • C. albicans in vivo scoring pipeline
      Python
      1000Updated Jul 5, 2025Jul 5, 2025
    • Functional genomic analysis of genes important for Candida albicans fitness in diverse environmental conditions
      Jupyter Notebook
      MIT License
      0000Updated Nov 22, 2024Nov 22, 2024
    • Mathematica
      0000Updated Jun 23, 2024Jun 23, 2024
    • BridGE: a pathway-based analysis tool for detecting genetic interactions from GWAS
      Python
      Other
      1500Updated Jun 24, 2023Jun 24, 2023
    • HTML
      1100Updated Aug 24, 2022Aug 24, 2022
    • Python
      Other
      2130Updated Aug 11, 2022Aug 11, 2022
    • ae-norm

      Public
      Autoencoder normalization of the DepMap
      R
      0100Updated May 11, 2022May 11, 2022
    • BridGE

      Public
      MATLAB
      1000Updated Apr 20, 2022Apr 20, 2022
    • Pipeline of building a machine learning model to identify C. albicans gene essentiality
      Python
      MIT License
      0500Updated Oct 13, 2021Oct 13, 2021
    • CG-TARGET

      Public
      R
      Other
      5103Updated Oct 5, 2021Oct 5, 2021
    • VS-SVM

      Public
      Improving Measures of Chemical Structural Similarity Using Machine Learning on Chemical-Genetic Interactions
      MATLAB
      0100Updated Aug 9, 2021Aug 9, 2021
    • orthrus

      Public
      R
      MIT License
      3000Updated May 27, 2021May 27, 2021
    • FLEX_R

      Public
      FunctionaL Evaluation of eXperimental perturbation (i.e. genome wide knockout) screens
      R
      GNU General Public License v3.0
      3000Updated Apr 27, 2021Apr 27, 2021
    • Compute genetic interactions from SGA output of colony sizes in yeast.
      MATLAB
      0410Updated Mar 8, 2021Mar 8, 2021
    • FLEX

      Public
      Functional Evaluation of Experimental Perturbations
      MIT License
      0000Updated Aug 30, 2020Aug 30, 2020
    • Python
      0000Updated Jun 19, 2019Jun 19, 2019
    • A simple tool for demultiplexing barcode sequencing experiments.
      Python
      1200Updated Jan 12, 2017Jan 12, 2017
    • Shell
      1000Updated Apr 19, 2016Apr 19, 2016
    • Supplemental Code
      MATLAB
      GNU General Public License v2.0
      0000Updated Dec 6, 2013Dec 6, 2013
    • A patch for Cluster3.0 (1.50) to add a "raw inner product" similarity option
      MIT License
      1000Updated Feb 9, 2013Feb 9, 2013
    • Mendalert

      Public
      A cronable script which check to see if new papers were added to a mendaley group. Emails a list if new papers are available.
      Perl
      MIT License
      1000Updated Nov 26, 2012Nov 26, 2012
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