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    25 repositories

    • orobas

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • GIN

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 24, 2026Feb 24, 2026

    • qGI

      Public
      Documented R code for the identification of quantitative genetic interactions from CRISPR screens
      R
      •
      MIT License
      •2•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • DeepSLP

      Public
      Leveraging cancer dependency data to predict synthetic lethality in human cells
      MIT License
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • Calbicans_invivo_pipeline

      Public
      C. albicans in vivo scoring pipeline
      Python
      •1•0•0•0•Updated Jul 5, 2025Jul 5, 2025

    • C.albicans_in_vitro_pipeline

      Public
      Functional genomic analysis of genes important for Candida albicans fitness in diverse environmental conditions
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • C.albicansDataHub

      Public
      Mathematica
      •0•0•0•0•Updated Jun 23, 2024Jun 23, 2024

    • BridGE-Python

      Public
      BridGE: a pathway-based analysis tool for detecting genetic interactions from GWAS
      Python
      •
      Other
      •1•5•0•0•Updated Jun 24, 2023Jun 24, 2023

    • CSBIO-Website

      Public
      HTML
      •1•1•0•0•Updated Aug 24, 2022Aug 24, 2022

    • BEAN-counter

      Public
      Python
      •
      Other
      •2•1•3•0•Updated Aug 11, 2022Aug 11, 2022

    • ae-norm

      Public
      Autoencoder normalization of the DepMap
      R
      •0•1•0•0•Updated May 11, 2022May 11, 2022

    • BridGE

      Public
      MATLAB
      •1•0•0•0•Updated Apr 20, 2022Apr 20, 2022

    • C.albicans-ml-pipeline

      Public
      Pipeline of building a machine learning model to identify C. albicans gene essentiality
      Python
      •
      MIT License
      •0•5•0•0•Updated Oct 13, 2021Oct 13, 2021

    • CG-TARGET

      Public
      R
      •
      Other
      •5•1•0•3•Updated Oct 5, 2021Oct 5, 2021

    • VS-SVM

      Public
      Improving Measures of Chemical Structural Similarity Using Machine Learning on Chemical-Genetic Interactions
      MATLAB
      •0•1•0•0•Updated Aug 9, 2021Aug 9, 2021

    • orthrus

      Public
      R
      •
      MIT License
      •3•0•0•0•Updated May 27, 2021May 27, 2021

    • FLEX_R

      Public
      FunctionaL Evaluation of eXperimental perturbation (i.e. genome wide knockout) screens
      R
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Apr 27, 2021Apr 27, 2021

    • SGA_Public

      Public
      Compute genetic interactions from SGA output of colony sizes in yeast.
      matlabscoring
      matlabscoring
      MATLAB
      •0•4•1•0•Updated Mar 8, 2021Mar 8, 2021

    • FLEX

      Public
      Functional Evaluation of Experimental Perturbations
      MIT License
      •0•0•0•0•Updated Aug 30, 2020Aug 30, 2020

    • camoco-cob-maize-demo

      Public
      Python
      •0•0•0•0•Updated Jun 19, 2019Jun 19, 2019

    • barseq_counter

      Public
      A simple tool for demultiplexing barcode sequencing experiments.
      Python
      •1•2•0•0•Updated Jan 12, 2017Jan 12, 2017

    • CamocoHelixInstall

      Public
      Shell
      •1•0•0•0•Updated Apr 19, 2016Apr 19, 2016

    • prototroph_scoring

      Public
      Supplemental Code
      MATLAB
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Dec 6, 2013Dec 6, 2013

    • cluster_innerproduct

      Public
      A patch for Cluster3.0 (1.50) to add a "raw inner product" similarity option
      MIT License
      •1•0•0•0•Updated Feb 9, 2013Feb 9, 2013

    • Mendalert

      Public
      A cronable script which check to see if new papers were added to a mendaley group. Emails a list if new papers are available.
      Perl
      •
      MIT License
      •1•0•0•0•Updated Nov 26, 2012Nov 26, 2012
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