Skip to content

@biodev Biodev - McWeeney Research Group

Change the repository type filter

All

    Repositories list

    30 repositories

    • complex2

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • cycIF-workflow

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

    • TKG-DTI

      Public
      Prediction of drug-target interactions using a knowledge graph that includes the cancer targetome resource
      Python
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Mar 18, 2026Mar 18, 2026

    • gsnn-mds

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 13, 2026Mar 13, 2026

    • BioDataManifest

      Public
      Tools for generating Biomedical Data Manifest HTML pages from survey results or the web
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 4, 2026Feb 4, 2026

    • BioDataManifestExamples

      Public
      Github Pages site to support the BioDataManifest Package
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 4, 2026Feb 4, 2026

    • AMLVAE

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • bias_fairness_in_ml

      Public
      Applied Labs for 'Achieving Fairness in ML/AI'
      HTML
      •0•0•0•0•Updated Jul 17, 2025Jul 17, 2025

    • path-gnn

      Public
      MIT License
      •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • MDSKG

      Public
      0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • hnscc_manuscript

      Public
      Workflow code supporting the manuscript 'Assessing Individual Head and Neck Squamous Cell Carcinoma Patient Response to Therapy Through Integration of Functiona…
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • amtec_manuscript

      Public
      Workflow code supporting the manuscript 'Utilizing cohort-level and individual networks to predict best response in patients with metastatic triple negative bre…
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 20, 2025Mar 20, 2025

    • hnscc_data

      Public
      Processed data to accompany 'Assessing Individual Head and Neck Squamous Cell Carcinoma Patient Response to Therapy Through Integration of Functional and Genomi…
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • nvflare-cancer

      Public
      Using nvflare federated learning in a cancer research project
      Shell
      •
      Apache License 2.0
      •1•2•0•0•Updated Nov 27, 2024Nov 27, 2024

    • MMDL_FL

      Public
      Updating and refactoring to support a federated learning scenario
      3•1•0•0•Updated Jul 12, 2024Jul 12, 2024

    • beataml2.0_data

      Public
      Data accompanying the BeatAML2.0 manuscript
      Creative Commons Attribution 4.0 International
      •2•6•0•0•Updated Feb 13, 2024Feb 13, 2024

    • SIG

      Public
      Workflows and code for the Systems Immunogenetics project
      Jupyter Notebook
      •3•1•0•0•Updated Nov 10, 2023Nov 10, 2023

    • beataml2_manuscript

      Public
      Workflow to reproduce results and figures for the second BeatAML manuscript
      R
      •3•15•1•0•Updated Jun 28, 2022Jun 28, 2022

    • HNSCC_Notebook

      Public
      Workflow of light/dark pathways in HNSCC
      HTML
      •1•0•0•0•Updated Oct 24, 2019Oct 24, 2019

    • packageDir

      Public
      pathway analysis package for HNSCC paper
      R
      •0•1•0•0•Updated Sep 9, 2019Sep 9, 2019

    • immpload

      Public
      Immport upload preparation
      immport
      immport
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Sep 4, 2019Sep 4, 2019

    • beataml_genomics

      Public
      Public version of BeatAML workflow
      Scala
      •0•1•0•0•Updated Jul 2, 2019Jul 2, 2019

    • openCyto

      Public
      A package that provides data analysis pipeline for flow cytometry.
      R
      •32•0•0•0•Updated Nov 8, 2017Nov 8, 2017

    • batchtools

      Public
      Tools for computation on batch systems
      R
      •
      GNU Lesser General Public License v3.0
      •52•0•0•0•Updated May 5, 2017May 5, 2017

    • BatchJobs

      Public
      BatchJobs: Batch computing with R
      R
      •
      Other
      •20•0•0•0•Updated Oct 10, 2016Oct 10, 2016

    • HitWalker2

      Public
      HTML
      •3•5•0•0•Updated Jan 4, 2016Jan 4, 2016

    • vcf2maf

      Public
      Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
      Perl
      •
      Apache License 2.0
      •223•0•0•0•Updated Jul 13, 2015Jul 13, 2015

    • gatk-protected

      Public
      GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
      Java
      •125•0•0•0•Updated May 18, 2015May 18, 2015

    • HTCondor_drivers

      Public
      Scala
      •0•0•0•0•Updated May 15, 2015May 15, 2015

    • pathLayerDistributionVersion2

      Public
      Experimental version, ie: not guaranteed to function correctly!
      R
      •1•0•0•0•Updated Feb 17, 2015Feb 17, 2015
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.