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@aramanlab Raman Lab of UChicago

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    7 repositories

    • Doran_etal_2023

      Public
      Curated code repository, reproducing analyses from "Subspecies phylogeny in the human gut revealed by coevolutionary constraints across the bacterial kingdom"
      Jupyter Notebook
      •0•0•0•0•Updated Jan 18, 2025Jan 18, 2025

    • SpectralInference.jl

      Public
      Spectral [phenotype/phylogenetic] Inference package
      Julia
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jun 4, 2024Jun 4, 2024

    • Oliveira_et_al_2024_V_Demo

      Public
      Statistical design of a synthetic bacterial community that clears a multi-drug resistant gut pathogen [V2]
      Jupyter Notebook
      •0•0•0•0•Updated Mar 28, 2024Mar 28, 2024

    • Doran_etal_2022

      Public
      Analyses for "An evolution-based framework for describing human gut bacteria"
      Jupyter Notebook
      •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • SPI.jl

      Public
      Julia
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•2•Updated Nov 29, 2023Nov 29, 2023

    • spipy

      Public
      Python tools for spectral inference
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 29, 2023Nov 29, 2023

    • NewickTreeTools.jl

      Public
      Julia
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•11•Updated Oct 29, 2023Oct 29, 2023
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