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    9 repositories

    • MOST-PHE

      Public
      Other
      •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • HTSdata-manager

      Public
      For testing purposes - creating a public copy of a private repository
      0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • SRST2

      Public
      Other
      •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • augur

      Public
      Pipeline components for real-time phylodynamic analysis
      Python
      •
      GNU Affero General Public License v3.0
      •136•0•0•0•Updated Dec 4, 2025Dec 4, 2025

    • autoshutdown

      Public
      Automatically shut down Linux VMs after a period of low CPU load
      Python
      •
      Other
      •1•0•1•0•Updated Nov 13, 2025Nov 13, 2025

    • auspice

      Public
      Web app for visualizing pathogen evolution
      JavaScript
      •
      GNU Affero General Public License v3.0
      •168•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • srst2-py3

      Public
      Short Read Sequence Typing for Bacterial Pathogens
      Python
      •
      Other
      •65•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • WGS_Pipelines

      Public
      Shell
      •0•0•0•0•Updated Dec 12, 2023Dec 12, 2023

    • KMERID-PHE

      Public
      MIT License
      •0•0•0•0•Updated Feb 21, 2022Feb 21, 2022