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@ZSI-Bio ZSI-Bio

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    21 repositories

    • variantsdwh

      Public
      Benchmarking distributed data warehouse solutions for storing genomic variant information paper repo
      Scala
      •
      Apache License 2.0
      •5•6•1•0•Updated Mar 3, 2023Mar 3, 2023

    • bdg-sequila

      Public archive
      SeQuiLa
      Scala
      •
      Apache License 2.0
      •12•7•28•10•Updated Nov 28, 2020Nov 28, 2020

    • kyuubi

      Public
      Kyuubi is an enhanced editon of Apache Spark's primordial Thrift JDBC/ODBC Server.
      Scala
      •
      Apache License 2.0
      •991•0•0•0•Updated Jun 22, 2020Jun 22, 2020

    • bdg-bootcamp

      Public
      0•0•0•0•Updated Feb 28, 2020Feb 28, 2020

    • edugen

      Public
      Student notebooks for omics data science course
      0•0•0•0•Updated Dec 12, 2019Dec 12, 2019

    • cnv-set-select

      Public
      Reference samples set selection for CNV callers
      Shell
      •0•0•0•0•Updated Mar 18, 2019Mar 18, 2019

    • shinyproxy

      Public
      ShinyProxy - Open Source Enterprise Deployment for Shiny
      Java
      •
      Apache License 2.0
      •158•0•0•0•Updated Mar 9, 2019Mar 9, 2019

    • containerproxy

      Public
      Manage HTTP proxy routes into Docker containers
      Java
      •
      Apache License 2.0
      •72•0•0•0•Updated Mar 7, 2019Mar 7, 2019

    • bdg-team

      Public
      0•0•2•0•Updated Dec 18, 2018Dec 18, 2018

    • CNV-opt

      Public
      Copy number variation optimizer
      R
      •0•0•15•3•Updated Oct 24, 2018Oct 24, 2018

    • bdg-sparklyr-sequila

      Public
      R
      •
      Apache License 2.0
      •1•1•1•0•Updated Jul 23, 2018Jul 23, 2018

    • bdg-dssconf-spark

      Public
      Java
      •
      Apache License 2.0
      •1•0•0•0•Updated Jun 5, 2018Jun 5, 2018

    • zsi-bio-page-poc

      Public
      Agency Theme for Jekyll
      JavaScript
      •
      Apache License 2.0
      •2.2k•0•0•0•Updated Aug 4, 2017Aug 4, 2017

    • HMZDelFinder

      Public
      CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data
      R
      •
      GNU General Public License v2.0
      •12•0•0•0•Updated Jul 12, 2017Jul 12, 2017

    • testthat

      Public
      An R package to make testing fun
      R
      •
      Other
      •342•0•0•0•Updated Jun 9, 2017Jun 9, 2017

    • scholar.py

      Public
      A parser for Google Scholar, written in Python
      Python
      •775•0•0•0•Updated Jun 3, 2017Jun 3, 2017

    • popgen

      Public
      Population structure analysis using the NGS data
      Scala
      •1•1•0•0•Updated Mar 18, 2017Mar 18, 2017

    • clinvar

      Public
      Parsing ClinVar data
      Python
      •56•0•0•0•Updated Nov 2, 2016Nov 2, 2016

    • jshu

      Public
      Simplified unit test framework for shell script which produces junit-style xml results file (for Jenkins/Hudson).
      Shell
      •
      BSD 2-Clause "Simplified" License
      •3•0•0•0•Updated Oct 4, 2016Oct 4, 2016

    • gene_lists

      Public
      List of gene lists for genomic analyses.
      Python
      •80•0•0•0•Updated May 23, 2016May 23, 2016

    • zsi-bio-cnv

      Public
      Scala
      •1•0•0•0•Updated Feb 4, 2016Feb 4, 2016
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