Repositories list

• semester-project-2026

  Public
  12•0•1•3•Updated Mar 10, 2026Mar 10, 2026

• QM_Course_Bio_Image_Analysis_with_napari_2024

  Public
  QM course lectures in Prague 2024 about bio-image analysis using napari

  Shell

  •

  Creative Commons Attribution 4.0 International

  •1•0•0•0•Updated Mar 21, 2024Mar 21, 2024

• napari-exercise

  Public
  napari exercise help repo

  2•0•0•0•Updated Mar 5, 2024Mar 5, 2024

• fair-python-cookiecutter

  Public
  An opinionated cookiecutter template to kickstart a modern best-practice Python project with FAIR metadata.

  Python

  •

  MIT License

  •5•0•0•0•Updated Feb 27, 2024Feb 27, 2024

• bia-repeatability-exercise

  Public
  Jupyter Notebook

  •8•0•1•1•Updated Feb 21, 2024Feb 21, 2024

• template

  Public template
  0•0•0•0•Updated Feb 16, 2024Feb 16, 2024

• .github

  Public
  MIT License

  •0•0•0•0•Updated Feb 14, 2024Feb 14, 2024

• jupyter_book_template

  Public template
  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Feb 14, 2024Feb 14, 2024

• BiaPy

  Public
  Open source Python library for building bioimage analysis pipelines

  Jupyter Notebook

  •

  MIT License

  •40•0•0•0•Updated Feb 13, 2024Feb 13, 2024

• BioImageAnalysisNotebooks

  Public
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

  Cool

  •

  BSD 3-Clause "New" or "Revised" License

  •41•0•0•0•Updated Jan 29, 2024Jan 29, 2024

• ReproducibleQuantitativeDataScience

  Public
  Post graduate course

  Jupyter Notebook

  •

  MIT License

  •10•0•0•0•Updated Dec 11, 2023Dec 11, 2023

• emboBioImage2023_registration

  Public
  Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •3•0•0•0•Updated Sep 15, 2023Sep 15, 2023