Repositories list

• MorrellLab.github.io

  Public
  Morrell lab website

  HTML

  •2•0•0•0•Updated Jan 2, 2026Jan 2, 2026

• cowpea_environmental

  Public
  Environmental association analysis in a cowpea collection

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

• morex_reference

  Public
  Preparation and processing steps related to all versions of the morex reference genome

  HTML

  •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

• WildIntrogression

  Public
  Searching for runs of IBS in introgressed wild barley

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •0•1•0•0•Updated Sep 13, 2025Sep 13, 2025

• sequence_handling

  Public
  A series of scripts to automate sequence workflows

  workflownanoporepipeline+ 2next-generation-sequencingsequence-processing

  Jupyter Notebook

  •10•19•3•0•Updated May 24, 2025May 24, 2025

• File_Conversions

  Public
  Scripts to convert between file formats for various analyses

  Python

  •5•16•0•0•Updated May 10, 2025May 10, 2025

• BAD_Mutations

  Public
  Deleterious mutation prediction pipeline

  Python

  •

  MIT License

  •5•13•18•0•Updated Dec 16, 2024Dec 16, 2024

• Soybean-CNV

  Public
  0•0•0•0•Updated May 25, 2024May 25, 2024

• Williams82_reference

  Public
  Preparation and processing steps related to various versions of the Williams82 reference genome

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 23, 2024Feb 23, 2024

• cowpea_annotation

  Public
  annotating cowpea SNPs

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Feb 9, 2024Feb 9, 2024

• Barley_Mutated

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 16, 2023Sep 16, 2023

• captured_50x_BED

  Public
  Scripts used to make the captured_50x_partsRef.bed

  HTML

  •0•0•0•0•Updated May 8, 2023May 8, 2023

• NorthAmerica_Fst

  Public
  Information related to the North American breeding programs Fst study

  R

  •1•0•0•0•Updated Feb 22, 2023Feb 22, 2023

• Cowpea_Pangenome

  Public
  Code for the cowpea pan-genome project

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 4, 2022Nov 4, 2022

• Locus_HvUGT13248

  Public
  Locus of interest for Gerit Bethke's project. Panel includes wild, landrace, and elite samples that were previously published in other studies.

  HTML

  •

  MIT License

  •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

• Barley_NAM_Parents

  Public
  Processing scripts and documentation for the 2-row and 6-row NAM parents

  Shell

  •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

• DoesNaughtCompute

  Public
  Code and example datasets for Does[0]Compute

  HTML

  •3•12•0•0•Updated Dec 2, 2021Dec 2, 2021

• Context_Variants_Soy

  Public
  The nature and context of variants and new mutations in soybean.

  HTML

  •0•0•0•0•Updated Nov 5, 2021Nov 5, 2021

• Nanopore

  Public
  Lab-specific protocols and data handling for Nanopore sequencing with the MinION.

  Shell

  •0•1•0•0•Updated Aug 12, 2021Aug 12, 2021

• SNP_Utils

  Public
  Extract SNP positions from BLAST XML and SAM formats

  Python

  •2•1•0•1•Updated May 7, 2021May 7, 2021

• SNPMeta

  Public
  SNPMeta collects metadata for SNP markers from BLAST searches against public databases.

  Python

  •1•2•0•0•Updated Apr 16, 2021Apr 16, 2021

• PopGenTheory

  Public
  Informal discussion group centered on population genetics and evolutionary genetics theory.

  2•2•0•0•Updated Feb 29, 2020Feb 29, 2020

• Deleterious_GP

  Public
  Deleterious mutations in a genomic prediction experiment

  R

  •0•6•0•0•Updated Sep 10, 2019Sep 10, 2019

• IPK_Landraces

  Public
  HTML

  •0•0•0•0•Updated Jun 13, 2019Jun 13, 2019

• Env_Assoc

  Public
  Environmental Associations project

  R

  •1•0•0•0•Updated Jun 13, 2019Jun 13, 2019

• Nanopore_sequencing

  Public
  This is for Nanopore sequencing.

  1•0•0•0•Updated May 7, 2019May 7, 2019

• LabUtilities

  Public
  Melting pot of useful scripts from lab members

  0•0•0•0•Updated Apr 22, 2019Apr 22, 2019

• Soy_Downsampling

  Public
  Processing scripts and documentation for the soybean downsampling sub-project

  Shell

  •0•0•0•0•Updated Oct 9, 2018Oct 9, 2018

• SNPtoSEQ

  Public
  Capture contextual sequences for a SNP

  Python

  •1•0•0•0•Updated Jun 12, 2017Jun 12, 2017

• Journals

  Public
  Recent finds in journals covering genetics, genomics, and evolutionary biology.

  1•2•0•0•Updated Apr 17, 2017Apr 17, 2017