Repositories list

• gerkelab-com

  Public
  Website source for gerkelab.com

  HTML

  •3•0•15•4•Updated Mar 27, 2024Mar 27, 2024

• TCGAhrd

  Public
  Homologous recombination deficiency in TCGA PanCancer Atlas

  HTML

  •

  MIT License

  •4•30•0•0•Updated Dec 31, 2020Dec 31, 2020

• mediator

  Public
  Causal mediation analysis in R

  R

  •

  Other

  •6•31•7•0•Updated Dec 12, 2020Dec 12, 2020

• fcds

  Public
  Process data from the Florida Cancer Data System

  R

  •

  Other

  •1•3•17•0•Updated Jul 30, 2020Jul 30, 2020

• core-r-course

  Public
  HTML

  •1•1•0•0•Updated Jun 11, 2020Jun 11, 2020

• betterposter

  Public
  👩‍🔬👨‍🔬 Another R Markdown Better Scientific Poster

  posterrmarkdownpagedown+ 2

  posterrmarkdownpagedownscientific-posterpagedjs

  HTML

  •

  Other

  •11•111•1•0•Updated Jun 11, 2020Jun 11, 2020

• ThyroidRAS

  Public
  Data and code for examining gene expression differences in RAS thyroid tumors

  R

  •0•1•0•0•Updated May 7, 2020May 7, 2020

• prostate-risk-classification

  Public
  comparing risk stratification tools for prostate cancer

  R

  •0•2•0•0•Updated Apr 29, 2020Apr 29, 2020

• TCGAancestry

  Public
  Admixture estimates for the TCGA panCancer cohort

  0•6•2•0•Updated Mar 17, 2020Mar 17, 2020

• grkmisc

  Public
  A package of miscellaneously helpful functions.

  R

  •

  Other

  •2•10•1•0•Updated Feb 18, 2020Feb 18, 2020

• hexLogoGerke

  Public
  Hex logo/sticker for Gerke Lab

  R

  •0•2•0•0•Updated Jan 14, 2020Jan 14, 2020

• shinyDAG

  Public
  a Shiny app to create/visualize/analyze causal diagrams (DAGs)

  R

  •

  MIT License

  •18•66•4•0•Updated Dec 5, 2019Dec 5, 2019

• prostatePrognosticPanels

  Public
  R

  •0•3•1•0•Updated Sep 11, 2019Sep 11, 2019

• gformula

  Public
  g-formula

  SAS

  •0•1•0•0•Updated Aug 13, 2019Aug 13, 2019

• epiTAD

  Public
  Visualize Hi-C data alongside annotation relevant to genetic epidemiology studies

  R

  •

  MIT License

  •3•3•2•2•Updated Jul 17, 2019Jul 17, 2019

• awesome-cancer-variant-databases

  Public
  A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

  MIT License

  •74•2•0•0•Updated Jul 17, 2019Jul 17, 2019

• TCGAclinical

  Public
  Clinical data for the TCGA PanCancer Atlas

  0•18•0•0•Updated Jul 12, 2019Jul 12, 2019

• moffitdocs

  Public
  R Markdown Templates for Moffitt Cancer Center

  R

  •2•2•0•0•Updated May 16, 2019May 16, 2019

• different

  Public
  Compare Differences in Data Frames

  R

  •

  Other

  •0•0•8•0•Updated May 14, 2019May 14, 2019

• fcdsExplorer

  Public
  R

  •0•0•0•0•Updated May 13, 2019May 13, 2019

• fcds-poster

  Public
  🖼 fcds poster

  HTML

  •0•1•0•0•Updated May 1, 2019May 1, 2019

• tricks

  Public
  Perform statistical tricks

  R

  •0•0•0•1•Updated Feb 1, 2019Feb 1, 2019

• SEERreadr

  Public
  Read SEER Fixed Width Data Files

  R

  •

  Other

  •0•2•3•0•Updated Jan 2, 2019Jan 2, 2019

• loglin

  Public
  Easy R Code for Convergent Log-Linear Models

  R

  •0•1•0•0•Updated Dec 5, 2018Dec 5, 2018

• curatedProstateData

  Public
  TeX

  •0•2•44•0•Updated Oct 10, 2018Oct 10, 2018

• cmediation

  Public
  Tools for Counterfactual Meditation Analysis

  R

  •0•0•0•0•Updated Oct 2, 2018Oct 2, 2018

• phenoptrExtra

  Public
  Extra functions to extend phenoptr

  R

  •0•0•2•0•Updated Oct 1, 2018Oct 1, 2018

• xCellCalls

  Public
  R

  •0•0•0•0•Updated Sep 17, 2018Sep 17, 2018

• PAM50

  Public
  R

  •1•0•0•1•Updated Sep 17, 2018Sep 17, 2018

• GSE46691

  Public
  Download and import GSE46691 into R with updated HUGO gene names

  R

  •1•0•0•0•Updated Sep 10, 2018Sep 10, 2018