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    23 repositories

    • smurff

      Public
      Bayesian Factorization with Side Information in C++ with Python wrapper
      pythonmatrix-factorizationbayesian-inferencegibbs-samplinglatent-featureslatent-fact-modelprobabilistic-matrix-factorization
      C++
      •
      MIT License
      •30•69•1•0•Updated Feb 10, 2026Feb 10, 2026

    • ptra

      Public
      Patient Trajectory Analysis Library
      Go
      •
      Other
      •3•7•0•0•Updated Jan 28, 2026Jan 28, 2026

    • vms

      Public
      Virtual Molecule Screening benchmark
      C
      •
      MIT License
      •2•1•0•0•Updated Apr 29, 2025Apr 29, 2025

    • bpmf

      Public
      Julia and C++ implementations of Bayesian Probabilistic Matrix Factorization using Markov Chain Monte Carlo
      C++
      •
      MIT License
      •13•57•0•0•Updated Jan 19, 2024Jan 19, 2024

    • elprep

      Public
      elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.
      Go
      •
      Other
      •41•290•21•1•Updated Jun 2, 2023Jun 2, 2023

    • elprep-bench

      Public
      elPrep reimplementations in C++ and Java, only for benchmark comparisons
      C++
      •
      Other
      •3•10•2•0•Updated Feb 13, 2023Feb 13, 2023

    • VoC-Interview

      Public
      0•0•0•0•Updated Sep 20, 2022Sep 20, 2022

    • Aki-Predictor

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •6•9•2•0•Updated Sep 20, 2022Sep 20, 2022

    • ICU72hReadmissionMIMICIII

      Public
      Prediction of ICU Readmissions Using Data at Patient Discharge using MIMICIII Database
      Python
      •
      MIT License
      •6•0•0•0•Updated Sep 20, 2022Sep 20, 2022

    • Severo.jl

      Public
      a software package for analysis and exploration of single-cell RNA-seq datasets
      Julia
      •
      Other
      •2•3•0•0•Updated Feb 2, 2022Feb 2, 2022

    • Severo-experiments

      Public
      Experiments for the Severo.jl package
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 2, 2021Dec 2, 2021

    • Severo_jll.jl

      Public
      Julia
      •
      Other
      •0•1•0•0•Updated Sep 24, 2021Sep 24, 2021

    • pargo

      Public
      A library for parallel programming in Go
      Go
      •
      BSD 3-Clause "New" or "Revised" License
      •7•189•0•0•Updated Jun 12, 2020Jun 12, 2020

    • cl-elprep

      Public
      elPrep: a high-performance tool for preparing sequencing alignment/map files in sequencing pipelines (Lisp version)
      Common Lisp
      •
      Other
      •3•14•0•0•Updated Feb 22, 2019Feb 22, 2019

    • correct-platinum-fastq-sequence-identifier

      Public
      Script for correcting sequence identifiers in Platinum whole genome sequences
      Go
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 11, 2019Jan 11, 2019

    • process-plate

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•4•0•Updated Oct 11, 2018Oct 11, 2018

    • cl-elprep-mongo

      Public
      elPrep-mongo is an extension of elPrep that allows for using MongoDB databases as input and/or output targets in elPrep.
      Common Lisp
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Sep 27, 2017Sep 27, 2017

    • shark

      Public
      Scalable Hybrid Array Kit (Shark)
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•9•0•0•Updated Nov 10, 2016Nov 10, 2016

    • cl-date-time-parser

      Public
      Parse date-time-string, liberally.
      Common Lisp
      •
      MIT License
      •4•0•0•0•Updated Oct 9, 2014Oct 9, 2014

    • cl-mongo-stream

      Public
      A stream-oriented implemented of the MongoDB wire protocol for Common Lisp.
      Common Lisp
      •
      BSD 3-Clause "New" or "Revised" License
      •0•4•0•0•Updated Sep 5, 2014Sep 5, 2014

    • bwa

      Public
      Burrow-Wheeler Aligner
      C
      •
      GNU General Public License v3.0
      •574•2•0•0•Updated Mar 12, 2014Mar 12, 2014

    • beam-road

      Public
      0•0•0•0•Updated Feb 28, 2014Feb 28, 2014

    • arrow-street

      Public
      C++11 containers with "structures of arrays" or "arrays of structures" memory layout.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •4•11•0•0•Updated Oct 8, 2013Oct 8, 2013