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    100 repositories

    • dnastack-client

      Public
      The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python
      pythonclientworkflowpython3omicsga4ghga4gh-wesdnastackga4gh-data-connectga4gh-service-registry
      Python
      •
      Apache License 2.0
      •0•0•3•20•Updated Feb 3, 2026Feb 3, 2026

    • aws-healthomics-engine-installer

      Public
      HCL
      •
      GNU Lesser General Public License v2.1
      •0•3•0•0•Updated Feb 2, 2026Feb 2, 2026

    • wf-common

      Public
      Workflows and tasks reused across harmonized ASAP workflows
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 1, 2026Feb 1, 2026

    • data-connect-trino

      Public
      Cloned from https://github.com/DNAstack/ga4gh-search-adapter-presto
      publisheractivetrinodata-connect
      Java
      •
      Apache License 2.0
      •3•4•3•11•Updated Jan 30, 2026Jan 30, 2026

    • cromwell-on-gcp-workbench-engine-installer

      Public
      Documentation and tools for creating a Cromwell installation on GCP compatible with DNAstack's Workbench.
      HCL
      •
      GNU Lesser General Public License v2.1
      •0•3•0•0•Updated Jan 30, 2026Jan 30, 2026

    • concourse-pipeline-jsonschema

      Public
      A Json Schema for Concourse Pipeline
      Go
      •
      Apache License 2.0
      •3•0•0•1•Updated Jan 29, 2026Jan 29, 2026

    • spatial-transcriptomics-wf

      Public
      Repo for testing and developing a common human postmortem-derived brain sequencing (PMDBS) and non-human workflow harmonized across ASAP with human and mouse sp…
      WDL
      •
      Apache License 2.0
      •1•0•0•1•Updated Jan 16, 2026Jan 16, 2026

    • cromwell-on-azure-workbench-engine-installer

      Public
      Documentation and tools for creating a CromwellOnAzure installation compatible with DNAstack's Workbench.
      HCL
      •
      GNU Lesser General Public License v2.1
      •0•1•0•0•Updated Jan 9, 2026Jan 9, 2026

    • HiFi-human-WGS-WDL

      Public
      WDL
      •
      BSD 3-Clause Clear License
      •50•0•0•0•Updated Jan 7, 2026Jan 7, 2026

    • wdl-common

      Public
      Fork of PacBio's wdl-common repo
      WDL
      •
      BSD 3-Clause Clear License
      •15•0•0•0•Updated Jan 7, 2026Jan 7, 2026

    • bioinformatics-public-docker-images

      Public
      Dockerfile
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Dec 9, 2025Dec 9, 2025

    • pmdbs-bulk-rnaseq-wf

      Public
      Repo for testing and developing a common postmortem-derived brain sequencing (PMDBS) workflow harmonized across ASAP with human bulk RNA sequencing data
      WDL
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 7, 2025Dec 7, 2025

    • platform-interview-exercise

      Public
      0•0•0•1•Updated Nov 25, 2025Nov 25, 2025

    • bioinformatics-scripts

      Public
      Scripts and resources for the bioinformatics team
      Shell
      •
      GNU General Public License v2.0
      •0•3•0•0•Updated Nov 7, 2025Nov 7, 2025

    • pmdbs-sc-rnaseq-wf

      Public
      Repo for testing and developing a common postmortem-derived brain sequencing (PMDBS) workflow harmonized across ASAP
      Python
      •
      Apache License 2.0
      •3•0•0•1•Updated Sep 17, 2025Sep 17, 2025

    • actuator-e2e-test

      Public
      Library for testing /actuator endpoint
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • cromwell-wes-service

      Public
      Java
      •
      GNU Lesser General Public License v2.1
      •1•10•0•0•Updated Aug 22, 2025Aug 22, 2025

    • concourse-oci-helm-chart-resource

      Public
      Concourse resource for Helm charts in OCI registries
      Go
      •
      Apache License 2.0
      •1•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • logback-extensions

      Public
      Extensions to logback for smoother integration with cloud environments.
      Java
      •
      Apache License 2.0
      •0•0•0•1•Updated Jul 10, 2025Jul 10, 2025

    • iceberg

      Public
      Apache Iceberg
      Java
      •
      Apache License 2.0
      •3k•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • wdl-ci

      Public
      Tools to validate and test WDL-based repositories. To be used as part of CI/CD pipelines
      wdl
      Python
      •
      GNU General Public License v2.0
      •1•5•1•3•Updated Jun 10, 2025Jun 10, 2025

    • concourse-helm3-resource

      Public
      Concourse resource to deploy Helm v3 charts.
      Shell
      •62•0•0•1•Updated Apr 4, 2025Apr 4, 2025

    • temp-test-repo-three

      Public
      0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • temp-test-repo-two

      Public
      0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • temp-test-repo-one

      Public
      0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • ga4gh-search-adapter-google-sheets

      Public
      Dataset API wrapper for Google Sheets
      Java
      •
      Apache License 2.0
      •0•1•0•2•Updated Dec 10, 2024Dec 10, 2024

    • ismb-2022-ga4gh-tutorial

      Public archive
      ISMB 2022 tutorial on FASP and Starter Kit
      Jupyter Notebook
      •
      Apache License 2.0
      •2•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • gatekeeper

      Public archive
      Gatekeeper
      Java
      •
      Other
      •0•0•0•1•Updated Sep 11, 2023Sep 11, 2023

    • wdl-mothur

      Public
      wdl-mothur is a repository featuring a Workflow Description Language (WDL) pipeline for seamless processing of 16S rRNA data using Mothur, enabling reproducible…
      WDL
      •1•0•1•0•Updated Aug 21, 2023Aug 21, 2023

    • sentieon-amazon-omics

      Public
      Sentieon pipelines for Amazon Omics
      WDL
      •
      BSD 2-Clause "Simplified" License
      •4•0•0•0•Updated Aug 2, 2023Aug 2, 2023