Repositories list

• membrain-pick

  Public
  Python

  •3•7•10•1•Updated Dec 6, 2025Dec 6, 2025

• membrain-stats

  Public
  Python

  •2•2•2•0•Updated Nov 19, 2025Nov 19, 2025

• stopgap-addons

  Public
  A set of add-ons for enhancing the STOPGAP experience.

  Shell

  •0•2•0•0•Updated Sep 10, 2025Sep 10, 2025

• chlamydataset2relion5

  Public archive
  Python script to import pre-processed results from the Chlamy dataset (EMPIAR-11830) into Relion-5

  Python

  •

  MIT License

  •0•2•0•0•Updated Apr 25, 2025Apr 25, 2025

• membrain_tutorial_scripts

  Public
  Jupyter Notebook

  •1•2•0•0•Updated Mar 24, 2025Mar 24, 2025

• cryoet-scripts

  Public
  Miscellaneous scripts for processing cryo-ET data

  Shell

  •1•20•0•0•Updated Feb 25, 2025Feb 25, 2025

• MemBrain-v2

  Public
  This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.

  Shell

  •2•21•2•0•Updated Jan 29, 2025Jan 29, 2025

• napari-lasso-3d

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•6•7•0•Updated Jan 9, 2025Jan 9, 2025

• slabify-et

  Public
  A CLI tool to segment the lamella slab in cryo-ET volumes

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•12•2•0•Updated Oct 21, 2024Oct 21, 2024

• relion5-scripts

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•7•0•0•Updated Sep 9, 2024Sep 9, 2024

• MemBrain

  Public
  Python

  •

  Mozilla Public License 2.0

  •2•36•1•0•Updated Jun 22, 2023Jun 22, 2023