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    7 repositories

    • irida-plugin-viral-amplicon-consensus-variants

      Public
      Sequence Analysis Pipeline for the IRIDA Platform for Viral Genomes
      microbial-genomicsvariant-callingviral-genomics
      microbial-genomicsvariant-callingviral-genomicssequence-analysis
      Java
      •
      Apache License 2.0
      •0•0•1•1•Updated Mar 27, 2026Mar 27, 2026

    • nf-ncov-voc

      Public
      A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in …
      Python
      •
      MIT License
      •5•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • covid-19-signal

      Public
      Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
      Python
      •
      MIT License
      •25•1•0•0•Updated Jul 30, 2022Jul 30, 2022

    • COVID-MVP

      Public
      COVID-MVP is an interactive heatmap based visualization tool for SARS-CoV-2. It tracks mutations along with their functional impact and prevalence in Variants o…
      Python
      •
      MIT License
      •2•0•0•0•Updated Apr 22, 2022Apr 22, 2022

    • covseq_McGill

      Public
      McGill SARS-CoV2 Documentation
      Python
      •1•0•0•0•Updated Nov 27, 2020Nov 27, 2020

    • covizu

      Public
      Rapid analysis and visualization of coronavirus genome variation
      Python
      •
      MIT License
      •20•2•0•0•Updated Nov 12, 2020Nov 12, 2020

    • ncov-tools

      Public
      Small collection of tools for performing quality control on coronavirus sequencing data and genomes
      Python
      •
      MIT License
      •15•0•0•0•Updated Nov 12, 2020Nov 12, 2020
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