Birol Lab
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Public⛓ Long Interval Nucleotide K-mer ScaffolderHLAminer
Public⛏ HLA predictions from NGS shotgun dataarcs
Public🌈Scaffold genome sequence assemblies using linked or long read sequencing dataabyss
Public:microscope: Assemble large genomes using short reads- Tandem repeat expansion detection or genotyping from long-read alignments
- :chains: Construct a Physical Map from Linked Reads
tigmint
Public⛓ Correct misassemblies using linked AND long readspavfinder_transcriptome
Publicpavfinder
Public:mag: Post Assembly Variants FinderStash
Publicgoldrush
PublicLinear-time de novo Long Read Assemblerbtllib
Public📚Bioinformatics Technology Lab common code libraryntSynt
PublicAMPd-Up
PublicAMPlify
PublicRNA-Bloom
Public:hibiscus: reference-free transcriptome assembly for short and long readsrAMPage
PublicntHash
PublicFast hash function for DNA/RNA sequencesntCard
PublicEstimating k-mer coverage histogram of genomics datantEmbd
PublicNanoSim
PublicNanopore sequence read simulatorAMPSeek
Public
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