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    69 repositories

    • Solvation

      Public
      Fork of the ensemble modeling architecture for solvation prediciton
      Jupyter Notebook
      •
      MIT License
      •3•0•6•0•Updated May 19, 2025May 19, 2025

    • nomelt

      Public
      Designing high temperature protein sequences via learned language processing
      Jupyter Notebook
      •
      MIT License
      •4•5•7•1•Updated Feb 28, 2025Feb 28, 2025

    • diff_transformers

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

    • llmao

      Public
      Combining LLMs with Adverse Outcome Pathway data
      biologyllm
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 6, 2024Jun 6, 2024

    • Alfred

      Public
      Jupyter Notebook
      •
      MIT License
      •5•0•0•0•Updated May 17, 2024May 17, 2024

    • codebase_github_actions

      Public
      Example Python codebase with continuous integration using GitHub actions
      Python
      •
      MIT License
      •5•0•0•0•Updated Feb 27, 2024Feb 27, 2024

    • react-5g-visualization

      Public
      JavaScript
      •1•0•0•0•Updated Oct 23, 2023Oct 23, 2023

    • learn2thermDB

      Public
      Prediction of high temperature stable protein structures approached as a natural language problem
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Sep 7, 2023Sep 7, 2023

    • learn2thermML

      Public
      Machine learning of low and high temperature proteins
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 24, 2023Aug 24, 2023

    • 5g-python-intro

      Public
      Intro repository for learning python with 5G rna-seq data
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated Aug 1, 2023Aug 1, 2023

    • taxatree

      Public
      Workflow for processing a 16s + taxid csv to a phylogenetic tree
      Python
      •
      MIT License
      •0•0•0•0•Updated May 22, 2023May 22, 2023

    • paper_summarizer

      Public
      Use LangChain to create a pipeline to summarizing academic papers
      Python
      •
      MIT License
      •0•0•0•0•Updated May 11, 2023May 11, 2023

    • min_ion_16s

      Public
      Prototype tooling for processing 16S full length amplicon data from min ion
      Python
      •
      MIT License
      •0•0•0•0•Updated May 10, 2023May 10, 2023

    • research-5G-transcriptomic-exploration

      Public
      HTML
      •
      MIT License
      •1•0•0•0•Updated Mar 23, 2023Mar 23, 2023

    • vagrant_en

      Public
      A 3D invariant graph-to-string translation VAE for de novo molecular design
      Python
      •
      MIT License
      •4•0•0•0•Updated Feb 2, 2023Feb 2, 2023

    • htseq

      Public
      HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
      Python
      •
      GNU General Public License v3.0
      •78•0•0•0•Updated Dec 13, 2022Dec 13, 2022

    • entropy

      Public
      Python
      •
      MIT License
      •19•0•0•0•Updated Dec 1, 2022Dec 1, 2022

    • PyMolSAR

      Public
      A Python toolkit to compute molecular features and predict activities and properties of small molecules
      Jupyter Notebook
      •
      MIT License
      •10•21•2•1•Updated Jan 28, 2022Jan 28, 2022

    • ADME-modeling-for-Cargill

      Public
      A machine learning model to estimate ADMET for non-human targets
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Jul 1, 2021Jul 1, 2021

    • odin

      Public
      Repo for documentation related to the Optical Density Instrument at the Stahl lab
      C++
      •
      MIT License
      •2•0•0•0•Updated Apr 5, 2021Apr 5, 2021

    • ODIn_dataServer

      Public
      Host side data logging server for ROGR (OD reporting)
      C
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Mar 18, 2021Mar 18, 2021

    • barrelseq

      Public
      Bacteria & archaea, isolate and simple community RNA-Seq analysis pipeline
      Python
      •
      MIT License
      •0•1•5•0•Updated Dec 15, 2020Dec 15, 2020

    • BETO_NLP

      Public
      Repo for working on the NLP project and will try to keep it neat.
      Python
      •
      MIT License
      •2•0•0•0•Updated Dec 14, 2020Dec 14, 2020

    • Updated_COVID-19_dashboard

      Public
      MIT License
      •1•0•0•0•Updated Dec 14, 2020Dec 14, 2020

    • Air.jl

      Public
      Light-weight functional collections and utilities for Julia.
      Julia
      •
      MIT License
      •2•0•0•0•Updated Aug 2, 2020Aug 2, 2020

    • UW-Molecular-Data-Mining

      Public
      Repository for chemical data extraction from literature corpora
      HTML
      •
      MIT License
      •8•0•0•0•Updated Jul 29, 2020Jul 29, 2020

    • OpenBattery

      Public
      High performance open source battery
      1•1•0•0•Updated May 13, 2020May 13, 2020

    • 5G_deseq2

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 9, 2020Apr 9, 2020

    • SBMLLint

      Public
      Model checker for the Antimony kinetics modeling lanauge.
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated Nov 21, 2019Nov 21, 2019

    • impedance.py

      Public
      A Python package for working with impedance data
      Python
      •
      MIT License
      •116•0•0•0•Updated Oct 15, 2019Oct 15, 2019