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    117 repositories

    • rems

      Public
      Resource Entitlement Management System is a tool for managing access rights to resources, such as research datasets.
      Clojure
      •
      MIT License
      •26•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • atol

      Public
      This repository hosts documentation for infrastructure being developed by the Australian Tree of Life Bioinformatics team
      SCSS
      •
      MIT License
      •1•0•2•0•Updated Dec 22, 2025Dec 22, 2025

    • aai-portal

      Public
      TypeScript
      •0•0•0•2•Updated Dec 19, 2025Dec 19, 2025

    • aai-backend

      Public
      The backend library between Auth0 and the AAI portal front end.
      Python
      •0•0•0•3•Updated Dec 19, 2025Dec 19, 2025

    • sbp-portal

      Public
      TypeScript
      •0•0•0•1•Updated Dec 18, 2025Dec 18, 2025

    • atol-canopy

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Dec 18, 2025Dec 18, 2025

    • sbp-backend

      Public
      Python
      •0•0•0•1•Updated Dec 18, 2025Dec 18, 2025

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1.1k•0•0•0•Updated Dec 16, 2025Dec 16, 2025

    • gen3_validator

      Public
      Performs validation of json objects to a gen3 jsonschema. Also provides tools to validate metadata linkage between data nodes.
      Python
      •
      Apache License 2.0
      •0•1•4•0•Updated Dec 12, 2025Dec 12, 2025

    • legume-grain-portal

      Public
      Landing page for the Legume Grain ‘Omics Initiative
      TypeScript
      •0•0•0•0•Updated Dec 7, 2025Dec 7, 2025

    • omix3-commons-frontend-app

      Public template
      Gen3 Data Commons template repository for gen3 frontend framework
      HTML
      •
      Apache License 2.0
      •28•1•0•0•Updated Dec 5, 2025Dec 5, 2025

    • rems-aws-cdk

      Public
      REMS Deployment with AWS CDK
      TypeScript
      •0•1•0•0•Updated Dec 2, 2025Dec 2, 2025

    • ables

      Public
      Australian BioCommons Leadership Share (ABLeS) documentation
      HTML
      •11•1•2•0•Updated Dec 2, 2025Dec 2, 2025

    • 2025-ABACBS-workshop

      Public
      HTML
      •
      Other
      •5•0•1•0•Updated Nov 26, 2025Nov 26, 2025

    • omix3-file-upload

      Public
      uploading files to S3-compatible storage and updates the corresponding Indexd records using Gen3 SDK commands.
      Python
      •0•0•0•0•Updated Nov 26, 2025Nov 26, 2025

    • acdc-data-portal

      Public
      Windmill: data portal for metadata submission and query
      JavaScript
      •
      Apache License 2.0
      •54•0•0•0•Updated Nov 18, 2025Nov 18, 2025

    • gen3-infra-bootstrap

      Public
      bootstrap shared Gen3 infrastructure (S3/SQS/SNS/etc.) and write the AWS Secrets Manager entries consumed by External Secrets Operator (ESO)
      TypeScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 15, 2025Nov 15, 2025

    • acdc-schema-json

      Public
      Contains the jsonschema for the Australian Cardiovascular Disease Project
      Python
      •1•1•1•0•Updated Nov 12, 2025Nov 12, 2025

    • insdc-benchmarking-scripts

      Public
      Python
      •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • gen3schemadev

      Public
      Gen3 Schema Development tools
      gen3
      Python
      •
      Apache License 2.0
      •1•1•6•0•Updated Nov 9, 2025Nov 9, 2025

    • gen3-dict-modeling

      Public
      Gen3 Data Dictionary Modeling
      Java
      •0•1•0•0•Updated Nov 6, 2025Nov 6, 2025

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •33•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • toolfinder

      Public
      Website for the Australian BioCommons ToolFinder
      HTML
      •
      MIT License
      •5•1•0•0•Updated Oct 27, 2025Oct 27, 2025

    • australianbiocommons.github.io

      Public
      Australian BioCommons ToolFinder and WorkflowFinder: contains tool and workflow install status
      infrastructuretoolsworkflows
      Python
      •
      Apache License 2.0
      •2•6•0•0•Updated Oct 27, 2025Oct 27, 2025

    • insdc-benchmarking-schema

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 16, 2025Oct 16, 2025

    • fence

      Public
      AuthN/AuthZ OIDC Service
      Python
      •
      Apache License 2.0
      •48•1•0•0•Updated Oct 16, 2025Oct 16, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •14•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • sower

      Public
      Job dispatcher for Kubernetes
      Go
      •
      Apache License 2.0
      •3•0•0•0•Updated Oct 9, 2025Oct 9, 2025

    • gen3-eks-pipeline

      Public
      TypeScript
      •1•0•0•1•Updated Oct 2, 2025Oct 2, 2025

    • gen3-workspace-images

      Public
      Australian BioCommons RStudio for Gen3
      Apache License 2.0
      •0•0•0•0•Updated Oct 1, 2025Oct 1, 2025