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    12 repositories

    • genesis_wdl

      Public
      WDL workflow for analysis based on the R GENESIS package
      R
      •
      MIT License
      •2•1•1•0•Updated Sep 16, 2021Sep 16, 2021

    • LDGds

      Public
      Calculate linkage disequilibrium from a GDS file.
      R
      •
      MIT License
      •1•1•0•0•Updated Jul 12, 2019Jul 12, 2019

    • genesis_nullmodel

      Public
      Creates null model for use in genesis_tests
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 20, 2017Dec 20, 2017

    • genesis_tests

      Public
      Runs genetic association tests using the null model from the genesis_nullmodel App
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 20, 2017Dec 20, 2017

    • workshop

      Public
      Handout for CHARGE 2017 Boston Workshop
      0•1•0•0•Updated Sep 26, 2017Sep 26, 2017

    • genesis_app

      Public
      DNA Nexus App for analysis based on the R GENESIS package
      R
      •0•0•0•0•Updated Aug 11, 2017Aug 11, 2017

    • convertVCF2GDS

      Public
      convertVCF2GDS
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 26, 2017Jun 26, 2017

    • gild

      Public
      Takes a GDS file as input and uses PLINK to compute LD scores for a specified lead variant over a given base pair region. The output file may be used to create …
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 26, 2017Jun 26, 2017

    • qqplot

      Public
      Generates a qq plot from the input p-value data
      R
      •0•0•0•0•Updated Jun 15, 2017Jun 15, 2017

    • assocplot

      Public
      Configures "Regional association plot" from a data file, selected reference panel, and either an index SNP, index gene, or specific region by Chr Position
      R
      •0•1•0•0•Updated Jun 15, 2017Jun 15, 2017

    • mhplot

      Public
      Generates a Manhattan plot from data provided
      R
      •0•0•0•0•Updated Jun 14, 2017Jun 14, 2017

    • bcf2vcf

      Public
      Converts BCF format file to VCF using bcftools
      Perl
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 25, 2017May 25, 2017
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