Fix get_netcdf_encoding bug for small datasets#202
Merged
mirzaees merged 3 commits intoopera-adt:mainfrom Feb 2, 2026
Merged
Conversation
- One comp dict was shared across all variables via encoding = {var: comp for var ...}. When modifying encoding[var]["chunksizes"] for a 2D variable, it mutated the shared dict,
affecting all other variables.
- No chunk capping: Chunksizes could exceed actual dimension sizes, causing NetCDF write failures for small datasets.
|
I tested this PR and I confirm it fixed the small dataset bug for my test case Test case |
Contributor
Author
|
i have a fix for tyro >= 1 here: 4b0fbab |
Contributor
|
Thank you @scottstanie and @alhandwerger |
mirzaees
approved these changes
Feb 2, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
encoding = {var: comp for var ...}. When modifyingencoding[var]["chunksizes"]for a 2D variable, it mutated the shared dict, affecting all other variables.chunksizescould exceed actual dimension sizes, causing NetCDF write failures for small datasets.