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Neurips2021/joint embedding migration#61

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KaiWaldrant wants to merge 46 commits intomainfrom
neurips2021/joint_embedding
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Neurips2021/joint embedding migration#61
KaiWaldrant wants to merge 46 commits intomainfrom
neurips2021/joint_embedding

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Migration of the multi modality - Joint embedding task from neurips 2021 to openproblems v2

@KaiWaldrant KaiWaldrant requested a review from rcannood January 6, 2023 20:56
# ensure that the command below is run from the root of the repository
cd "$REPO_ROOT"

COMMON_DATASETS="resources/datasets/openproblems_v1"
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Still need to check which datasets need to be uploaded to S3


cat("Creating mod1 object\n")
out_mod1 <- anndata::AnnData(
X = input_mod1$X,
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@KaiWaldrant KaiWaldrant Jan 12, 2023

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raw data was already normalized -> store data in .layers["normalized"] instead of X ?

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