Branch dedicated to dev demo

.gitignore

@@ -15,4 +15,5 @@ inst/doc
 *.sqlite
 /pkgdown/
 /test_data/
-*.rds
+*.rds
+rsconnect/

app.R

@@ -9,11 +9,40 @@ options( "golem.app.prod" = TRUE)
 # update manifest file
 # if absolute path is needed for renv profile
 # Sys.setenv(RENV_PROFILE = "full")
+# Sys.setenv(RENV_PROFILE = "minimal")
+# Install {clinsight}
+# remotes::install_github(
+#   "openpharma/clinsight",
+#   ref = "dev",
+#   force = TRUE
+# )
+# packageVersion("clinsight") 
+# renv::snapshot()
 # renv::paths$lockfile() # test
 # assignInNamespace(
 #   "renvLockFile",
 #   \(...) renv::paths$lockfile(),
 #   "rsconnect"
 # )
 # rsconnect::writeManifest() # run if needed
-clinsight::run_app() # add parameters here (if any)
+# clinsight::run_app() # add parameters here (if any)
+
+# Run the application
+load_and_run_app <- function(){
+  app_data_folder <- "./app/"
+  if(!dir.exists(app_data_folder)) dir.create(app_data_folder)
+  old_golem_config <- Sys.getenv("GOLEM_CONFIG_ACTIVE")
+  Sys.setenv("GOLEM_CONFIG_ACTIVE" = "dev")
+
+  clinsight::run_app(
+    data_folder = app_data_folder,
+    onStart = \(){
+      onStop(\(){
+    #   unlink(temp_folder, recursive = TRUE); 
+      Sys.setenv("GOLEM_CONFIG_ACTIVE" = old_golem_config)
+      }
+    )}
+  )
+} 
+
+load_and_run_app()

clinsight.Rproj

@@ -1,4 +1,5 @@
 Version: 1.0
+ProjectId: 587215bb-819c-4942-a6c8-4b99d218e8ea
 
 RestoreWorkspace: Default
 SaveWorkspace: Default

dev/02_dev.R

@@ -93,6 +93,10 @@ clinsightful_data |>
 ## install.package('attachment') # if needed.
 #attachment::att_amend_desc()
 
+## Add packages ----
+# usethis::use_package("")
+remotes::instal
+
 ## Add modules ----
 ## Create a module infrastructure in R/
 golem::add_module(name = "name_of_module1", with_test = TRUE) # Name of the module

dev/03_deploy.R

@@ -25,11 +25,17 @@
 ## sent to CRAN, or to a package manager
 #pkgbuild::build()
 
-# ignore certain packages in the 'minimal' renv environment:
-renv::settings$ignored.packages(c("pak", "pkgdown", "stringr", "kableExtra", "usethis", "cowplot"))
-renv::activate(profile = "full")
+# renv::activate(profile = "full")
 # Use this to create a production-ready Docker image, with minimal number of dependencies:
 renv::activate(profile = "minimal")
+
+# ignore certain packages in the 'minimal' renv environment:
+renv::settings$ignored.packages(
+  c("clinsight","pak", "pkgdown", "kableExtra", "usethis", "cowplot"))
+utils::install.packages("pkgload")
+renv::snapshot()
+# renv::install("pkgload")
+
 ## RStudio ----
 ## If you want to deploy on RStudio related platforms
 golem::add_rstudioconnect_file()

renv/profiles/deploy_minimal/renv/settings.json

@@ -7,8 +7,7 @@
     "pkgdown",
     "kableExtra",
     "usethis",
-    "cowplot",
-    "shinymanager"
+    "cowplot"
   ],
   "package.dependency.fields": [
     "Imports",