TASK-5564 - Update data sources for CellBase 6.x#307

Merged

jtarraga merged 44 commits intodevelopfrom

Jan 23, 2026

Commits on Dec 19, 2023

models: add PGS data models, #TASK-5407, #TASK-5387
jtarraga
committed

Commits on Dec 21, 2023

models: add protein substitution prediction (e.g., for AlphaMissense), #TASK-5419, #TASK-5388
jtarraga
committed

Commits on Dec 22, 2023

Commits on Jan 3, 2024

models: improve PGS models for variant annotation, #TASK-5411, #TASK-5387
jtarraga
committed

Commits on Jan 5, 2024

models: update data models for AlphaMissense and Revel, #TASK-5419, #TASK-5388
jtarraga
committed

Commits on Mar 28, 2024

formats: implement parser for file miRNA.dat, #TASK-5954, #TASK-5564
jtarraga
committed

Commits on Apr 19, 2024

Merge branch 'develop' into TASK-5387
jtarraga
committed

Commits on Apr 25, 2024

models: update PharmGKB classes according to the data model changes, #TASK-5775, #TASK-5564
jtarraga
committed

Commits on May 7, 2024

Commits on May 27, 2024

Commits on Jun 23, 2024

Merge branch 'develop' into TASK-5564
imedina
committed

Commits on Jul 22, 2024

Merge branch 'develop' into TASK-5564
jtarraga
committed

Commits on Jul 23, 2024

Merge branch 'TASK-5564' of https://github.com/opencb/biodata into TASK-5564
jtarraga
committed

Commits on Aug 9, 2024

Merge branch 'develop' into TASK-5564
jtarraga
committed

Commits on Aug 13, 2024

Merge branch 'TASK-5564' into TASK-5387
jtarraga
committed

Commits on May 29, 2025

Merge branch 'release-3.x.x' into TASK-5564
jtarraga
committed

Commits on Jun 2, 2025

formats: add parser for UniProt 2025-02, #TASK-5576, #TASK-5564
jtarraga
committed

Commits on Jun 10, 2025

models: add imprinted data in gene annotation, #TASK-7745, #TASK-5564
jtarraga
committed

Commits on Jun 25, 2025

Commits on Jul 7, 2025

Commits on Jul 8, 2025

Merge branch 'develop' into TASK-5564
jtarraga
committed

Commits on Jul 24, 2025

formats: add ChimerDB parser, #TASK-7830, #TASK-5564
jtarraga
committed

Commits on Jul 27, 2025

models: add ChimerDB data (gene fusion), #TASK-7830, #TASK-5564
jtarraga
committed

Commits on Jul 28, 2025

Commits on Jul 29, 2025

formats: initialize the attributes map before parsing ChimerDB, #TASK-7830, #TASK-5564
jtarraga
committed

Commits on Aug 5, 2025

formats: add parser for files ChimerSeq.xlsx and ChimerPub.xlsx, #TASK-7830, #TASK-5564
jtarraga
committed

Commits on Aug 11, 2025

Commits on Sep 5, 2025

formats: implement the CIViC parser, #TASK-7903, #TASK-5564
jtarraga
committed

Commits on Sep 25, 2025

formats: improve CIViC parser, #TASK-7903, #TASK-5564
jtarraga
committed

Commits on Nov 12, 2025

Merge branch 'develop' into TASK-5564
jtarraga
committed

Commits on Dec 19, 2025

Merge branch 'develop' into TASK-5564
jtarraga
authored

Commits on Jan 19, 2026

Commits on Jan 20, 2026

test: update JUnit tests, #TASK-5564
jtarraga
committed