Some changes on `finemapper.py` with data parsing, and if unnecessary, i'll only submit the code with bug fix for bgen file#188

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1511878618 wants to merge 12 commits intoomerwe:masterfrom

1511878618:master

Commits on Mar 14, 2024

fix bugs for finemapper.py with bgen input
big_xutingfeng
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Commits on Mar 15, 2024

update LD result with npz to accleate load speed
big_xutingfeng
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Commits on Mar 16, 2024

fix bugs for local npz file founded and --cache-dir is passed
big_xutingfeng
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fix bugs
big_xutingfeng
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fix a god damn bugs by misstake touch the keyboard
big_xutingfeng
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Commits on Mar 17, 2024

No need for assert LD_array is all not NA, but drop them all to filter
big_xutingfeng
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fix bugs for filtering NA LD
big_xutingfeng
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add pgen file as --geno and cal ld by finemap_tools
big_xutingfeng
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black code
big_xutingfeng
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restrict LD by pgen in snp set in sumstats
big_xutingfeng
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Commits on Mar 18, 2024

finnal update with little format changes by xtf
big_xutingfeng
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remove comments unnecessary
big_xutingfeng
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