Fix build & pkg_resources fix

.github/workflows/workflow.yml

@@ -15,15 +15,15 @@ jobs:
       fail-fast: false
       matrix:
         python-version:
-          - '3.8'
+          - '3.10'
         os:
-          - ubuntu-20.04
+          - ubuntu-22.04
         commands:
           - 'install'
     runs-on: ${{ matrix.os }}
     services:
       postgres:
-        image: postgres:11
+        image: postgres:16
         env:
           POSTGRES_DB: omero
           POSTGRES_PASSWORD: omero
@@ -37,9 +37,9 @@ jobs:
           --health-timeout 5s
           --health-retries 5
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - name: Install Ice Java and Python binding
-        uses: ome/action-ice@v1
+        uses: ome/action-ice@v4
       - name: Install Python dependencies
         run: |
           pip install flake8 tox wheel pytest

ci-build

@@ -4,6 +4,12 @@ set -e
 set -u
 set -x
 
+python --version
+pip install setuptools==v71.1.0
+sudo sh -c 'echo "deb http://apt.postgresql.org/pub/repos/apt $(lsb_release -cs)-pgdg main" > /etc/apt/sources.list.d/pgdg.list'
+wget -qO- https://www.postgresql.org/media/keys/ACCC4CF8.asc | sudo tee /etc/apt/trusted.gpg.d/pgdg.asc &>/dev/null
+sudo apt update
+sudo apt install postgresql
 python setup.py test -t test/unit -v
 python setup.py test -t test/integration -v -m "not slowtest"
 python setup.py sdist install
@@ -29,7 +35,7 @@ if [ $TEST = install ]; then
   # Check db dump file
   omego db dump --serverdir OMERO.server --dumpfile omero.pgdump
 
-  pg_restore -l omero.pgdump | grep 'dbpatch_versions_trigger'
+  pg_restore --host=localhost -l omero.pgdump | grep 'dbpatch_versions_trigger'
 fi
 
 #Test a multistage DB upgrade (5.3 -> 5.4) as part of the server upgrade

omego/version.py

@@ -22,7 +22,7 @@
 
 from __future__ import print_function
 import yaclifw.version
-from pkg_resources import resource_string
+import os
 
 
 class Version(yaclifw.version.Version):
@@ -32,4 +32,10 @@ class Version(yaclifw.version.Version):
 
     def __call__(self, args):
         super(yaclifw.version.Version, self).__call__(args)
-        print(resource_string(__name__, 'RELEASE-VERSION').rstrip())
+
+        # print version from RELEASE-VERSION file
+        base_dir = os.path.dirname(os.path.abspath(__file__))
+        file_path = os.path.join(base_dir, 'RELEASE-VERSION')
+        with open(file_path, 'r') as f:
+            data = f.read()
+            print(data)

setup.py

@@ -131,7 +131,7 @@ def run_tests(self):
 
       cmdclass={'test': PyTest},
       tests_require=[
-          'pytest>4,<5',
+          'pytest>4',
           'restview',
           'mox3',
       ],

test/integration/test_download.py

@@ -20,7 +20,6 @@
 # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
 
 from __future__ import division
-from past.utils import old_div
 from builtins import object
 import pytest  # noqa
 
@@ -38,74 +37,6 @@ def download(self, *args):
         main("omego", args=args, items=[("download", DownloadCommand)])
 
 
-class TestDownloadJenkins(Downloader):
-
-    def setup_class(self):
-        self.artifact = 'java'
-        self.branch = 'OMERO-build'
-        self.ice = '3.6'
-
-    def testDownloadNoUnzip(self, tmpdir):
-        with tmpdir.as_cwd():
-            self.download('--skipunzip', '--branch', self.branch,
-                          '--ice', self.ice)
-            files = tmpdir.listdir()
-            assert len(files) == 1
-
-    def testDownloadUnzip(self, tmpdir):
-        with tmpdir.as_cwd():
-            self.download('--branch', self.branch, '--ice', self.ice)
-            files = tmpdir.listdir()
-            assert len(files) == 2
-
-    def testDownloadUnzipDir(self, tmpdir):
-        with tmpdir.as_cwd():
-            self.download('--unzipdir', 'OMERO.java', '--branch', self.branch,
-                          '--ice', self.ice)
-            expected = old_div(tmpdir, 'OMERO.java')
-            assert expected.exists()
-            assert expected.isdir()
-
-    def testDownloadSym(self, tmpdir):
-        with tmpdir.as_cwd():
-            self.download('--branch', self.branch, '--ice', self.ice,
-                          '--sym', 'auto')
-            files = tmpdir.listdir()
-            assert len(files) == 3
-
-            expected = old_div(tmpdir, 'OMERO.java')
-            assert expected.exists()
-            assert expected.isdir()
-
-            # Part two, if an artifact already exists and is unzipped check
-            # that a new symlink is created if necessary
-            self.download('--branch', self.branch, '--ice', self.ice,
-                          '--sym', 'custom.sym')
-            files2 = tmpdir.listdir()
-            files2diff = set(files2).symmetric_difference(files)
-            assert len(files2diff) == 1
-            sym2 = files2diff.pop()
-            assert sym2 == (old_div(tmpdir, 'custom.sym'))
-            assert sym2.isdir()
-
-    def testDownloadBuildNumber(self):
-        # Old Jenkins artifacts are deleted so we can't download.
-        # Instead assert that an AttributeError is raised.
-        # This is not ideal since this error could occur for other reasons.
-        branch = self.branch + ':600'
-        with pytest.raises(AttributeError) as exc:
-            self.download('--branch', branch, '--ice', self.ice)
-        assert 'No artifacts' in exc.value.args[0]
-
-    def testDownloadList(self, tmpdir):
-        self.artifact = ''
-        self.branch = 'latest'
-        with tmpdir.as_cwd():
-            self.download('--branch', self.branch)
-            files = tmpdir.listdir()
-            assert len(files) == 0
-
-
 class TestDownloadRelease(Downloader):
 
     def setup_class(self):
@@ -121,18 +52,3 @@ def testDownloadRelease(self, tmpdir):
     def testDownloadNonExistingArtifact(self):
         with pytest.raises(AttributeError):
             self.download('-n', '--release', '5.3', '--ice', '3.3')
-
-
-class TestDownloadBioFormats(Downloader):
-
-    def setup_class(self):
-        self.branch = 'BIOFORMATS-build'
-
-    def testDownloadJar(self, tmpdir):
-        self.artifact = 'formats-api'
-        with tmpdir.as_cwd():
-            self.download('--branch', self.branch)
-            files = tmpdir.listdir()
-            assert len(files) == 1
-            assert files[0].basename.endswith(".jar")
-            assert files[0].basename.startswith('formats-api')

tox.ini

@@ -4,32 +4,42 @@
 # and then run "tox" from this directory.
 
 [tox]
-envlist = py27, py38
+envlist = py310
 # https://tox.readthedocs.io/en/latest/config.html#conf-requires
 # Ensure pip is new so we can install manylinux wheel
 requires = pip >= 19.0.0
            virtualenv >= 16.0.0
 
 [testenv]
 # Variables used by ci-build
-passenv = HOME USER_AGENT TEST
+passenv = HOME, USER_AGENT, TEST
+allowlist_externals = bash
 commands =
     ; python setup.py test -vst test/unit/
-    ./ci-build
+    bash ./ci-build
 
-[testenv:py27ci]
-basepython = python2.7
-platform = linux.*
-deps =
-    setuptools>=40.0
-    https://github.com/ome/zeroc-ice-py-manylinux/releases/download/0.1.0/zeroc_ice-3.6.5-cp27-cp27mu-manylinux2010_x86_64.whl
 
-[testenv:py38ci]
-basepython = python3.8
+
+[testenv:py310ci]
+basepython = python3.10
 platform = linux.*
 deps =
     setuptools>=40.0
-    https://github.com/ome/zeroc-ice-ubuntu2004/releases/download/0.2.0/zeroc_ice-3.6.5-cp38-cp38-linux_x86_64.whl
+    https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp310-cp310-manylinux_2_28_x86_64.whl
+
+; [testenv:py312ci]
+; basepython = python3.12
+; platform = linux.*
+; deps =
+;     setuptools>=40.0
+;     https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp312-cp312-manylinux_2_28_x86_64.whl
+
+; [testenv:py311ci]
+; basepython = python3.11
+; platform = linux.*
+; deps =
+;     ; setuptools>=40.0
+;     https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
 
 ; [testenv:py27]
 ; basepython = /CONDA/envs/tox-py27/bin/python