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12 changes: 6 additions & 6 deletions examples/multiscales_strict/multiscales_example.json
Original file line number Diff line number Diff line change
Expand Up @@ -21,40 +21,40 @@
],
"datasets": [
{
"path": "0",
"path": "s0",
"coordinateTransformations": [
{
// the voxel size for the first scale level (0.5 micrometer)
// and the time unit (0.1 milliseconds), which is the same for each scale level
"type": "scale",
"scale": [0.1, 1.0, 0.5, 0.5, 0.5],
"input": "0",
"input": "s0",
"output": "intrinsic"
}
]
},
{
"path": "1",
"path": "s1",
"coordinateTransformations": [
{
// the voxel size for the second scale level (downscaled by a factor of 2 -> 1 micrometer)
// and the time unit (0.1 milliseconds), which is the same for each scale level
"type": "scale",
"scale": [0.1, 1.0, 1.0, 1.0, 1.0],
"input": "1",
"input": "s1",
"output": "intrinsic"
}
]
},
{
"path": "2",
"path": "s2",
"coordinateTransformations": [
{
// the voxel size for the third scale level (downscaled by a factor of 4 -> 2 micrometer)
// and the time unit (0.1 milliseconds), which is the same for each scale level
"type": "scale",
"scale": [0.1, 1.0, 2.0, 2.0, 2.0],
"input": "2",
"input": "s2",
"output": "intrinsic"
}
]
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4 changes: 2 additions & 2 deletions examples/multiscales_strict/multiscales_transformations.json
Original file line number Diff line number Diff line change
Expand Up @@ -40,12 +40,12 @@
],
"datasets": [
{
"path": "0",
"path": "s0",
"coordinateTransformations": [
{
"scale": [1, 1],
"type": "scale",
"input": "0",
"input": "s0",
"output": "intrinsic"
}
]
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10 changes: 5 additions & 5 deletions index.md
Original file line number Diff line number Diff line change
Expand Up @@ -73,7 +73,7 @@ Note that the number of dimensions is variable between 2 and 5 and that axis nam
│ # Group level attributes are stored in the `zarr.json` file and include
│ # "multiscales" and "omero" (see below).
├── 0 # Each multiscale level is stored as a separate Zarr array,
├── s0 # Each multiscale level is stored as a separate Zarr array,
│ ... # which is a folder containing chunk files which compose the array.
├── n # The name of the array is arbitrary with the ordering defined by
│ │ # by the "multiscales" metadata, but is often a sequence starting at 0.
Expand All @@ -98,7 +98,7 @@ Note that the number of dimensions is variable between 2 and 5 and that axis nam
├── zarr.json # Zarr Group which is both a multiscaled image as well as a labeled image.
│ # Metadata of the related image and as well as display information under the "image-label" key.
├── 0 # Each multiscale level is stored as a separate Zarr array, as above, but only integer values
├── s0 # Each multiscale level is stored as a separate Zarr array, as above, but only integer values
└── ... # are supported.
```

Expand Down Expand Up @@ -130,7 +130,7 @@ A well group SHOULD NOT be present if there are no images in the well.
│ │ ├── 0 # First field of view of well A1
│ │ │ │
│ │ │ ├── zarr.json # Implements "multiscales", "omero"
│ │ │ ├── 0 # Resolution levels
│ │ │ ├── s0 # Resolution levels
│ │ │ ├── ...
│ │ │ └── labels # Labels (optional)
│ │ └── ... # Other fields of view
Expand Down Expand Up @@ -498,12 +498,12 @@ store.zarr # Root folder of the zarr store
├── volume
│ ├── zarr.json # group level attributes (multiscales)
│ └── 0 # a group containing the 0th scale
│ └── s0 # a group containing the 0th scale
│ └── image # a zarr array
│ └── zarr.json # physical coordinate system and transformations here
└── crop
├── zarr.json # group level attributes (multiscales)
└── 0 # a group containing the 0th scale
└── s0 # a group containing the 0th scale
└── image # a zarr array
└── zarr.json # physical coordinate system and transformations here
</pre>
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