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Dataframe subsetting fixes #2

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Dataframe subsetting fixes #2

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41137cb
Changed all cases of df[,column-name] to df[[column-name]] in order t…
emmaSkarstein Mar 11, 2020
4f4f8f0
Changed back to original subsetting some places.
emmaSkarstein Mar 18, 2020
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4 changes: 2 additions & 2 deletions R/MakeBinomStack.R
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Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,7 @@ MakeBinomStack=function(data, observs, tag="points", intercept=TRUE, mesh, presn
if(length(presname)>1) stop("more than one name given for presences column")
if(length(trialname)>1) stop("more than one name given for number of trials column")
if(!presname%in%names(observs@data)) stop(paste(presname," not in names of presences data frame", sep=""))
if(!is.logical(observs@data[,presname]) & !trialname%in%names(observs@data))
if(!is.logical(observs@data[[presname]]) & !trialname%in%names(observs@data))
stop(paste(trialname," not in names of presences data frame", sep=""))

if(is.null(coordnames)) coordnames <- colnames(data@coords)
Expand All @@ -43,7 +43,7 @@ MakeBinomStack=function(data, observs, tag="points", intercept=TRUE, mesh, presn
}

# If presences are Boolean, reformat
if(is.logical(observs@data[,presname])) {
if(is.logical(observs@data[[presname]])) {
observs@data[,presname] <- as.integer(observs@data[,presname])
observs@data[,trialname] <- rep(1, nrow(observs@data))
}
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