mfdb-dbbuilder

Metabolite Fetcher DB's database builder tool that parses external dbs with bulk export support

Building the database

1. Cloning remote databases

   hello

   1.1 Scraping KEGG yourself (optional)

   1.2 Downloading pubchem bulk metabolites

2. Constructing [DDB]

   2.1 Mass discovery algorithm

   2.2 Filtering out duplicates

   2.3 Gathering statistics (optional)

3. Uploading database to AWS

   3.1 Uploading

   3.2

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UMI DB website

Universal Metabolite Identifier (MUI)

Searching

Molecular search

Mass search

JSMol search

UMI API (cloud)

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Discovery Algorithm