chore: upgrade beads to v0.56.1 with Dolt backend

.beads/.gitignore

@@ -1,42 +1,52 @@
-# SQLite databases
-*.db
-*.db?*
-*.db-journal
-*.db-wal
-*.db-shm
+# Dolt database (managed by Dolt, not git)
+dolt/
+dolt-access.lock
 
-# Daemon runtime files
-daemon.lock
-daemon.log
-daemon.pid
+# Runtime files
 bd.sock
+bd.sock.startlock
 sync-state.json
 last-touched
 
 # Local version tracking (prevents upgrade notification spam after git ops)
 .local_version
 
-# Legacy database files
-db.sqlite
-bd.db
-
 # Worktree redirect file (contains relative path to main repo's .beads/)
 # Must not be committed as paths would be wrong in other clones
 redirect
 
-# Merge artifacts (temporary files from 3-way merge)
+# Sync state (local-only, per-machine)
+# These files are machine-specific and should not be shared across clones
+.sync.lock
+.jsonl.lock
+sync_base.jsonl
+export-state/
+
+# Ephemeral store (SQLite - wisps/molecules, intentionally not versioned)
+ephemeral.sqlite3
+ephemeral.sqlite3-journal
+ephemeral.sqlite3-wal
+ephemeral.sqlite3-shm
+
+# Legacy files (from pre-Dolt versions)
+*.db
+*.db?*
+*.db-journal
+*.db-wal
+*.db-shm
+db.sqlite
+bd.db
+daemon.lock
+daemon.log
+daemon-*.log.gz
+daemon.pid
 beads.base.jsonl
 beads.base.meta.json
 beads.left.jsonl
 beads.left.meta.json
 beads.right.jsonl
 beads.right.meta.json
 
-# Sync state (local-only, per-machine)
-# These files are machine-specific and should not be shared across clones
-.sync.lock
-sync_base.jsonl
-
 # NOTE: Do NOT add negation patterns (e.g., !issues.jsonl) here.
 # They would override fork protection in .git/info/exclude, allowing
 # contributors to accidentally commit upstream issue databases.

.beads/README.md

@@ -26,8 +26,8 @@ bd show <issue-id>
 bd update <issue-id> --status in_progress
 bd update <issue-id> --status done
 
-# Sync with git remote
-bd sync
+# Sync with Dolt remote
+bd dolt push
 ```
 
 ### Working with Issues

.beads/config.yaml

@@ -1,62 +1,2 @@
-# Beads Configuration File
-# This file configures default behavior for all bd commands in this repository
-# All settings can also be set via environment variables (BD_* prefix)
-# or overridden with command-line flags
-
-# Issue prefix for this repository (used by bd init)
-# If not set, bd init will auto-detect from directory name
-# Example: issue-prefix: "myproject" creates issues like "myproject-1", "myproject-2", etc.
-# issue-prefix: ""
-
-# Use no-db mode: load from JSONL, no SQLite, write back after each command
-# When true, bd will use .beads/issues.jsonl as the source of truth
-# instead of SQLite database
-# no-db: false
-
-# Disable daemon for RPC communication (forces direct database access)
-# no-daemon: false
-
-# Disable auto-flush of database to JSONL after mutations
-# no-auto-flush: false
-
-# Disable auto-import from JSONL when it's newer than database
-# no-auto-import: false
-
-# Enable JSON output by default
-# json: false
-
-# Default actor for audit trails (overridden by BD_ACTOR or --actor)
-# actor: ""
-
-# Path to database (overridden by BEADS_DB or --db)
-# db: ""
-
-# Auto-start daemon if not running (can also use BEADS_AUTO_START_DAEMON)
-# auto-start-daemon: true
-
-# Debounce interval for auto-flush (can also use BEADS_FLUSH_DEBOUNCE)
-# flush-debounce: "5s"
-
-# Git branch for beads commits (bd sync will commit to this branch)
-# IMPORTANT: Set this for team projects so all clones use the same sync branch.
-# This setting persists across clones (unlike database config which is gitignored).
-# Can also use BEADS_SYNC_BRANCH env var for local override.
-# If not set, bd sync will require you to run 'bd config set sync.branch <branch>'.
-# sync-branch: "beads-sync"
-
-# Multi-repo configuration (experimental - bd-307)
-# Allows hydrating from multiple repositories and routing writes to the correct JSONL
-# repos:
-#   primary: "."  # Primary repo (where this database lives)
-#   additional:   # Additional repos to hydrate from (read-only)
-#     - ~/beads-planning  # Personal planning repo
-#     - ~/work-planning   # Work planning repo
-
-# Integration settings (access with 'bd config get/set')
-# These are stored in the database, not in this file:
-# - jira.url
-# - jira.project
-# - linear.url
-# - linear.api-key
-# - github.org
-# - github.repo
+sync:
+    mode: dolt-native