Welcome to WCSim

WCSim is a very flexible Geant4-based program for developing and simulating large water Cherenkov detectors.

As of August 2014 WCSim has been moved to GitHub. It can be found here

WCSim has very few external dependencies. It relies on only ROOT and Geant4.

There is a mailing list which will send you GitHub push/checkin notifications here

You can follow issues/requests etc by watching the GitHub respository.

Validation Webpage

WCSim uses GitHub Actions CI to perform build and physics tests for each pull request and commit. The scripts it runs can be found in this separate github repository

Validation results can be found here

Documentation

Caution

The WCSim wiki & PDF documentation are outdated.

The doxygen documentation is more correct, but incomplete.

Tutorials and information about the branches and WCSim development model can be found on the wiki

More detailed information about the simulation is available in doc/DetectorDocumentation.pdf

Additionally, doxygen documentation is available here. Note that most of the code has no doxygen comments, but all output class member variables are documented. See the WCSimRoot* classes

doxygen documentation can be built locally by running

cd $WCSIM_SOURCE_DIR/ && doxygen WCSim_doxygen_config

For admin: A more featured doxygen build can be performed & pushed using an alternative doxygen config file (requires dot from graphviz)

git clone -b gh-pages --single-branch git@github.com:WCSim/WCSim.git WCSim-dox
cd WCSim-dox
./get_dox.sh

You can also make this featured version locally by

cd $WCSIM_SOURCE_DIR
git clone -b gh-pages --single-branch git@github.com:WCSim/WCSim.git WCSim-dox
doxygen WCSim-dox/WCSim_doxygen_config

Build Instructions

Dependencies

The automated building testing is currently performed inside the hk-software docker container with the prerequisites:

Geant4 10.3.3 (installed via CMake)
- All of the G4 data files are also required to be installed, include hadron xsec, etc.
ROOT 6.26/04 (installed via CMake)
HepMC3 3.2.6
gcc 8.5.0
CMake 3.20.2

And as such this is the most supported version of the software (it is guaranteed to work)

Tip

If you just need to read WCSim output files, you can do this without the G4 dependency using the WCSim_WCSimRoot_only CMake option (see here).

Other versions of prerequisite software can be tried, but aren't guaranteed to work.

Geant
- If using a newer version of Geant, it is your responsiblity to assess whether Geant physics changes are significant, relative to the officially supported 4.10.3.3
ROOT
- ROOT5 (e.g. v5r34p36 or v5r34p38, or potentially any v5r34) can potentially be made to work. You may need to modify $WCSIM_BUILD_DIR/src/cmake_install.cmake to take account of ROOT5 not producing .pcm files
- ROOT6 has been tested on an older version than above (6.20/04)
HepMC3
- HepMC3 version 3.2.6 is supported and any minor versions below/above this should also work.
- It is possible that older versions (<=3.1.x) will also work, though this is not guaranteed.
CMake 3.1 and above are required by CMakeLists.txt, but not all old versions have been tested
The compiler should support -std=c++11 (or -std=c++0x) e.g. gcc 4.8.5
- The WCSim CMake step should set your C++ standard to be the same as what was used by the installation of ROOT you are building against

Build Instructions using CMake

CMake is cross-platform software for managing the build process in a compiler-independent way. It is required to build ROOT and Geant4 also through CMake. Using cmake, builds and source code need to well separated and make it easier to build many versions of the same software.

A recommended way to set up the directory structure in your own preferred WCSIM_HOME:

${WCSIM_HOME}/WCSim : contains the src dir, typically the cloned or unzipped code from GitHub
${WCSIM_HOME}/WCSim_build : contains directories for each build, eg. for each branch you want to test or for different releases, comparing debugged versions, etc. Each subdirectory like WCSim_dev or WCSim_v1.2 would contain the intermediate files produced during compilation and not the finale ones

To compile you need to have CMakeLists.txt in the WCSim source dir.

mkdir -p ${WCSIM_HOME}/WCSim_build/mydir ; cd ${WCSIM_HOME}/WCSim_build/mydir

Set up the dependencies

source /path/to/thisroot.sh
source /path/to/geant4.sh

cmake3 ../../WCSim : this executes the commands in CMakeLists.txt and generates the Makefiles for both the ROOT library as the main executable.
- For some OS, cmake3 is just cmake
make clean : if necessary
make -j`nproc` install : will
- first compile libWCSimRoot.so which you need for using the ROOT Dict from WCSim (e.g. to read the output files)
- compile WCSim (libWCSimCore.so and the executable WCSim)
- install the software in the build directory (copies things into bin/, include/, etc.)
source bin/this_wcsim.sh : will setup the environment variables such that you can run WCSim

To recompile:

Typically just make install will be enough and also redo the cmake phase if something changed.
Sometimes you need to make clean first.
When there are problems, try removing CMakeCache.txt, and redo the cmake.

Useful cmake commands:

make edit_cache : customize the build.
make rebuild_cache : redo the cmake phase.

WCSim cmake build options

-DWCSim_Geometry_Overlaps_CHECK=<ON|OFF> If ON, turns on geometry overlap checking when running the code (slow, but important when setting new detector geometry options). Default: OFF
-DWCSim_DEBUG_COMPILE_FLAG=<ON|OFF> If ON, turns on the gcc debug compiler flag -g. Default: OFF
-DWCSIM_SAVE_PHOTON_HISTORY_FLAG=<ON|OFF> If ON, turns on photon scattering/reflection history saving. The data class WCSimRootCherenkovHitHistory is used in a similar way as WCSimRootCherenkovHitTime. Default: OFF
-DWCSim_WCSimRoot_only=<ON|OFF> If ON, only builds the WCSimRoot library (ignoring the WCSimCore one). This is useful if one wants only to read the WCSim output files (for e.g. reconstruction) and not running any simulation. Default: OFF
-DWCSISM_HEPMC3_ENABLED=<ON|OFF> If ON, attempts to build the HepMC3 interface. The CMAKE_PREFIX_PATH needs to be setup correctly to point towards the HepMC3 cmake config file to find this.

Build with CMake on sukap:

A script allowing to build WCSim with CMake on sukap is available:

cd $WCSIM_SOURCE_DIR
./setup/env_sukap.sh
./make.sh

Note that ./make.sh should also work on other systems.

This script will read the current WCSim directory name and create a directory to hold the different cmake builds. For example, in case your current WCSim directory name is 'WCSim', it will create a '../WCSim-build' directory. It will also create a ../WCSim-install directory.

It will then create a directory for your current branch which will have the name of the current branch. For example, in case your current branch name is hybridPMT, you will have:

WCSim/
WCSim-build/
WCSim-build/hybridPMT/
WCSim-install/
WCSim-install/hybridPMT/

Note that by default, just make install is run. You can run make clean before make install by running ./make.sh clean

Build Instructions using GNUmakefile

Caution

GNUmakefile is specifically only for use with ROOT5 and is not supported otherwise.

All output that needs to be trusted must use cmake. To discourage you from using this, the GNUmakefile is hidden in a different branch

The result of a build using the GNUmakefile will be different to the result of a CMake build. If you are using WCSim as a dependency for other packages, you will have to update their build paths to find WCSim includes/libraries

export WCSIM_BUILD_DIR=/path/to/WCSim/
cd $WCSIM_BUILD_DIR
git clone --depth 1 https://github.com/WCSim/WCSim.git -b makefile --single-branch makefiledir
cp makefiledir/GNUmakefile .
make clean_wcsim
make rootcint
make

Using WCSim without building using Docker

Docker allows you to use WCSim without compiling in an OS independant way. The Docker images are hosted on DockerHub and can be used by following the steps below.

Important

Automated WCSim Dockerfile builds have stopped working. There have been no requests (yet) to restore them.

In the meantime, if you are a Hyper-K collaborator you can use the hk-software image. (This is what the CI uses)

Alternatively, the old Dockerfiles are still available in this repository. You are free to use/modify them to build a newer version of WCSim for your use. If you do, please share your Dockerfile changes via a pull request.

Install Docker cross platform instructions can be found at https://www.docker.com/
Get the latest HK container image docker pull ghcr.io/hyperk/hk-software:main
Run an instance of the container which will have WCSim and all dependencies installed docker run --name=WCSim -it ghcr.io/hyperk/hk-software:main

Note: only run once or you will make multiple contianers
To save data from inside your docker image mount a local folder in the docker image at runtime and then anything placed in that directory will be available in that folder after exit. To do that run the following docker run --name=WCSim -it -v local_folder_path:docker_mount_path ghcr.io/hyperk/hk-software:main

The WCSim version in the container will probably be out of date. Let's update it

cd $WCSIM_SOURCE_DIR
git pull origin develop
cd ../build-Linux_x86_64-gcc_8-python_3.8.13
make -j`nproc` install

Run WCSim
To exit the docker image exit

Note: You only need to use the docker run command once to create the container. Once created you changes are saved in that container instance and you can start the container at any time with docker start -i WCSim

Extra docker commands:

See all images docker images
Delete an image docker rmi imageID
See all containers docker ps -a
Delete a container docker rm ContainerID

Using WCSim without building using Singularity

Singularity is a similar container tool with different philosophies. The most important being that you can't run as root. This means that it may be installed and available to use on your local cluster.

You should be able to run the docker container with singularity without any problems. Just to note that $WCSIM_SOURCE_DIR and $WCSIM_BUILD_DIR will be read-only, therefore you should clone, build, and run a new version of WCSim elsewhere (if you forget you'll see a nasty seg fault when running WCSim - this is just because of the read-only directory).

Running WCSim

To test that WCSim is working (however you installed it), try running the test macro WCSim.mac, which runs 10 electrons with 5 MeV of energy in the Super-Kamiokande detector (it should take less than a minute to run).

cd $WCSIM_BUILD_DIR
WCSim WCSim.mac macros/tuning_parameters.mac

WCSim.mac is well commented. Take a look inside (and also at other .mac files in /macros/) for the various options you can use to run WCSim

Warning

There is a memory leak when doing TTree::GetEntry() when reading files. It is also presumed that filling is leaky. It is strongly recommended not to generate or analyse O(1000) events in a single job

Analysing the output of WCSim

There are a few example scripts inside sample-root-scripts/

sample_readfile.C is a general script that allows you to see (most) event-level variables
For the hybrid geometry, see AnalyzeWSHierarchy.c
- Compile it using the Makefile in sample-root-scripts/ (i.e. run make from that folder)
- Execute it using Analyzer.sh in sample-root-scripts/ (i.e. run ./Analyzer.sh from that folder)
For info about the other scripts, see the README inside sample-root-scripts/

Warning

There is a memory leak when doing TTree::GetEntry() when reading files. It is also presumed that filling is leaky. It is strongly recommended not to generate or analyse O(1000) events in a single job

Color Convention for visualization used in `WCSimVismanager.cc`

gamma = green
neutrino = yellow
electron = blue
positron = red
muon = white
muon+ = silver
proton = magenta
neutron = cyan

WCSim development is supported by the United States National Science Foundation.

License

nickwp/WCSim

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