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Merged
nschan merged 14 commits into from
Jul 21, 2025
Merged

Comments lundin #174

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e4eea9d
add prefix to singularity container for report
nschan May 22, 2025
e148a95
Merge branch 'nf-core:dev' into dev
nschan May 22, 2025
51281c7
Merge branch 'nf-core:dev' into dev
nschan Jun 2, 2025
5c92346
Merge branch 'nf-core:dev' into dev
nschan Jun 26, 2025
5c836b1
Merge branch 'nf-core:dev' into dev
nschan Jul 1, 2025
268a29b
Merge branch 'nf-core:dev' into dev
nschan Jul 1, 2025
0202358
Merge branch 'nf-core:dev' into dev
nschan Jul 2, 2025
4de24cc
Merge branch 'nf-core:dev' into dev
nschan Jul 11, 2025
4e98303
maxime comments
nschan Jul 11, 2025
376973f
comments Daniel Lundin
nschan Jul 21, 2025
a8e9afc
update release date
nschan Jul 21, 2025
5c5b2d2
Revert "comments Daniel Lundin"
nschan Jul 21, 2025
e379ca4
Daniel Lundin comments
nschan Jul 21, 2025
9e6bc78
Merge branch 'dev' into comments_lundin
nschan Jul 21, 2025
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2 changes: 1 addition & 1 deletion CHANGELOG.md
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Expand Up @@ -3,7 +3,7 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v1.1.0 'Brass Pigeon' - [2025-07-11]
## v1.1.0 'Brass Pigeon' - [2025-07-21]

### `Added`

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4 changes: 2 additions & 2 deletions modules/local/collect_reads/main.nf
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Expand Up @@ -18,7 +18,7 @@ process COLLECT_READS {
def prefix = task.ext.prefix ?: "${meta.id}"

"""
zcat ${reads} | gzip > ${prefix}_all_reads.fq.gz
cat ${reads} > ${prefix}_all_reads.fq.gz
cat <<-END_VERSIONS > versions.yml
"${task.process}":
gzip: \$(echo \$(gzip --version | head -n1 | sed 's/gzip //'))
Expand All @@ -28,7 +28,7 @@ process COLLECT_READS {
stub:
def prefix = task.ext.prefix ?: "${meta.id}"
"""
touch ${prefix}_all_reads.fq.gz
touch ${prefix}_all_reads.fq; gzip ${prefix}_all_reads.fq
cat <<-END_VERSIONS > versions.yml
"${task.process}":
gzip: \$(echo \$(gzip --version | head -n1 | sed 's/gzip //'))
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